| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0114 |
|---|
| Symbol | |
|---|
| ID | 8131014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 142116 |
|---|
| End bp | 143474 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863384 |
|---|
| Product | inner membrane permease YgbN |
|---|
| Protein accession | YP_003015712 |
|---|
| Protein GI | 253686522 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2610] H+/gluconate symporter and related permeases |
|---|
| TIGRFAM ID | [TIGR00791] gluconate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCT CGCTCTTACT CTGCATCGCT ATCGCCGGGG TATTACTCCT GTTGCTGATG
GTCATTAAAT TTAAAATACA GCCCTTTGTC GCCCTGCTGG TCGTCAGCTT ACTTGTTGCG
CTGGCAACCG GAATACCCAC AGAAGAAATA ATGAAAGTCA TGTCCAGTGG CATGGGAGGC
GTTCTCGGCT CGATCACCAT GATCATTGGA CTGGGTGCCA TGTTGGGAAG AATGATCGAA
ATTTCTGGCG GAGCCGAATC TCTGGCAAGG AAATTTACCC AAACACTGGG AGAAAAGCGC
GTTATTGCGG CGCTGACTAT GGCAGCATTT ATTCTCGGTA TTCCGGTATT TTTTGATGTC
GGCTTTATTA TCCTCGCCCC GATTATTTAC GGCTTTGCGA AAGTCGCGAA AGTCTCTCCA
CTTAAATTCG GTTTGCCCGT CGCCGGTGTC ATGCTGACTG TGCACGTTGC GCTTCCCCCT
CACCCAGGCC CAGTGGCCGC GGCCAGTTTG TTAAAAGCAG ATGTGGGCTG GTTAACCATA
TTGGGGCTGG CGATTTCTAT TCCTGTCGGC ATTATCGGTT TCTGGGTCGC CAAATATATC
AACCGCCGCC AATACGCCTT ATCTGTTGAT GTGCTGGAGC AATTACAACT CACGAAAACG
GAAGACAAAA GTGAGGCCGT CCAACATAAA AATGCCCCCT CTGCAAGTCT GGTAACTGCG
CTAATCGTCA TTCCTATCGC AATTATCATG CTCGGTACGG TAGCGGCAAC ACTTTTCCCC
GTAGGCCACC CACTGCGTAA CATCACTACG TTGGTCGGTT CCCCTGCAGT GGCATTACTC
ATCGCTCTAG CGCTGGCATT TTATTTTATC GCCATGCGTC GCGGCTGGTC GCTTGAAAAG
ACCGGTAACG TTATGGGCGA TGCCATGCCT GCCGCAGCCG TCGTGATTAT GGTGACTGGC
GCAGGTGGCG TGTTCGGCAA GGTATTGGTG GAATCCGGTG TGGGGAAGGC GCTGGCGGAT
ACGCTGACCA GCATCCACCT GCCGCTGGTG CCTGCCGCAT TTCTTCTGTC GCTGGCGCTA
CGCGCCTCGC AAGGCTCCGC CACCGTTGCC ATTCTCACCA CCTGCGGCCT GCTGAGCGAA
GCCGTCAGCG GCCTGAACCA GATGCAGTTG GTGCTGGTAA CGCTCTCTGC CTGCTTTGGC
GGGCTGGGTC TGTCGCACGT TAATGACTCG GGTTTCTGGA TCGTCACCAA ATATCTGGGG
CTGTCCGTCG CCGATGGCCT GCGCACCTGG ACGGTGCTGA CAACTATCCT CGGGCTAGCC
GGGTTCCTTT TCACCTGGGC GTTGTGGCTG GTGATGTAA
|
|---|
| Protein sequence | MATSLLLCIA IAGVLLLLLM VIKFKIQPFV ALLVVSLLVA LATGIPTEEI MKVMSSGMGG
VLGSITMIIG LGAMLGRMIE ISGGAESLAR KFTQTLGEKR VIAALTMAAF ILGIPVFFDV
GFIILAPIIY GFAKVAKVSP LKFGLPVAGV MLTVHVALPP HPGPVAAASL LKADVGWLTI
LGLAISIPVG IIGFWVAKYI NRRQYALSVD VLEQLQLTKT EDKSEAVQHK NAPSASLVTA
LIVIPIAIIM LGTVAATLFP VGHPLRNITT LVGSPAVALL IALALAFYFI AMRRGWSLEK
TGNVMGDAMP AAAVVIMVTG AGGVFGKVLV ESGVGKALAD TLTSIHLPLV PAAFLLSLAL
RASQGSATVA ILTTCGLLSE AVSGLNQMQL VLVTLSACFG GLGLSHVNDS GFWIVTKYLG
LSVADGLRTW TVLTTILGLA GFLFTWALWL VM
|
|---|
| |