Gene Dd1591_4142 details

Gene Information

• Locus tag: Dd1591_4142
• ID: 8117587
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 4671909
• End bp: 4672535
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644854517
• Product: TPR repeat-containing protein
• Protein accession: YP_003006417
• Protein GI: 251791696
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCTGC GATCAATGGT GCTACTGCTC GGCGGATTAC TGGCGGCCGA CATGGTCTAT 
GCCAGCGACA TGTCGATGGA TATCCATCGG CAATGGTCGG TCTGCCAGTA CAAAACGCCG 
GCGAGTCAGA AAGAAGCCTG CTTCGCCGCG CTGAGCCAGC AAGCGCAGGA ACTGGCGGAA 
AACCACCCCA CACGGGCGGA TTACCTGATC TGGTCCGCCA TGGTGGAGAG TAGCTGGGCG 
GGCGTTAAAG ACGGCATGGA AGCGCTCAAT CTGGCCGGGC AGGCCAAAAA TTTGCTGGAA 
AAAGCGATCG TGCTTGACCC GCAGGCCTTG AACGGCGCGG CTTACACTAT TCTCGGCGTG 
CTTTACTATC AGGTGCCGGG CTGGCCGCTG GGGTTTGGTG ATGACAAAAA AGCAGAGCGC 
TATCTCAAAA CCGCATTGAA AATCAGTCCC GCCAGCATTG ACGCCAATTT CTTCTACGGC 
GACTTTCTGC TGAAAACAGG GCGCAAAAGT GAGGCCAGAC AATACCTGAC TACCGCGCTG 
GCAACCACGC CGCGCCCAGG GCGTGAAATT GCCGACCAGG GCCGACGCGC AGAGGCCGAA 
AAAGCGCTGG CTCAATTGAG GCAGTGA 

 

Protein sequence

MTLRSMVLLL GGLLAADMVY ASDMSMDIHR QWSVCQYKTP ASQKEACFAA LSQQAQELAE 
NHPTRADYLI WSAMVESSWA GVKDGMEALN LAGQAKNLLE KAIVLDPQAL NGAAYTILGV 
LYYQVPGWPL GFGDDKKAER YLKTALKISP ASIDANFFYG DFLLKTGRKS EARQYLTTAL 
ATTPRPGREI ADQGRRAEAE KALAQLRQ