| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3287 |
|---|
| Symbol | |
|---|
| ID | 8119022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3739402 |
|---|
| End bp | 3741972 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644853664 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003005585 |
|---|
| Protein GI | 251790864 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.550182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGC ATCTCTATTT GATGATGATA CTCGGCGTAT CATCAACGGC TACGGCTGCC
GGGCAGACAG ACCAAACAGA AAATACGGCT ACCGATAAAC CGGCGACGAC AGAAAAGAAA
CACGCCGATG AAGATACCAT TCTGGTCCGT TCCACCCCCA CCAGCCAGAG CATGGGTACG
CAGATTATTA ACAGCGAGCA GATTCAGCGC CGGCCGACCC GTAACGGCAG CGTGACTGAA
TTATTGCGCT CCAACCCAAA CGTACGTTTC TCCAATGATC TGGACAGCAG TACGACGCCG
GGTGAATTAG CACCGGAAAA TGTGTCTTTT CATGGTGAAA AGTTTTACCA GAATAACTAC
ATGATTGACG GGCTATCCAA TAATAATGTG ATTAACCCCG GAGCCAATAA CGGTCAATTG
ACTAATACGC CGGACGGTTA TTCCCCAACA GACCTGCCCG CCGGCGGTGC GCAATCATTC
TGGATTAACT CAGAATTGAT CGAGCAATTA CAGGTATTCG ACAGCAATAT CTCCGCAAAA
TATGGCGACT TTACCGGCGG CGTGGTTGAT GCCAAATTAA AAGACCCCAA ATTGGATCGC
GCTTCCGGCA AGATTTCTTA CCGCACTACC CGCGACAGCT GGGCCCGTTA TCATATTGAC
GACGATATTG AAGGTGATTT TTATTCCGCC AGCCAGCTCT ATTATCAGCC GAAATTCCGC
AAGAATTTTT ATTCCGCCAC CTTTAATCAG CCATTAAGCG ACAAGGCCGG ATTTATTTTT
GCCTATAACC GCCAGCAGTC GACCATTCCG TTTTACAACA GTGTGATGGA TGAATGGGTA
AAACAGACCC GTGAAGCGGA AACCTACTTG CTTAAAGGGA CTTATCTGGC CGATAACGGC
GATATTTTTC GCCTGACCGG GATGTACGCA CCGCATGAAT CCGGCTATTA CAAAAAAGAC
ATTAAAAACG GCGGTTATAC CAATACCGGC GGCGGTTATC GCGGCAATAT CGAATGGGAA
CACAACGCAG ATTGGGGGAA AGTCAGCAGT CTGGCGGGGT ATCAGTTTGA AGAAAACCGT
ATTGAACACG AATCGGATAC TTACCAGTCC TGGTATCGCT ATAACCTGTC GTCCCGATTT
GTGTCCAATG TGGTGGATTG GGGGACGGGT ATACCAGGAA GGAATTCCCA GCTATCGGGG
ATCGGCGGCT ACGGCAAGTA TGCCACCGAG AAACGGACCT TCACCTTCAA ACAGGATTAT
GAATTAAACC CGTTGGCTTT ATGGGGAACC AGCCATCAGC TTGATATGGG CTGGCAGGTG
GATTCTTACC ACGCCCAATA CCGCCGTTTT AGCGATGTCT ATACCAGCCG CAACACGCCC
ACCATCAGCA CCAGCGTCGT GTGCCAGACC GGCGATGCCT TCTGTATTAA TGGCGAGCAG
TATTTCCGCA GCCGCAATCT GTTCCCGGCG CGTCAGGTGG AAGGCAGCTA CGTGAATTAT
GCGGTGTATT TGCAGGATAG CGTCAGTTAC AAGAATCTGG AGGTGACGCC GGGTGTGCGC
CTGCAATATG ACGACTACCT GAAAAACCTC AATCTCGCCC CGCGTCTGGC GGCCTCTTAC
GATGTGTTTG GCGATCGCAC TACCCGTGTT TTCGGCGGTG CCAACCGTTA TTACGCCCAG
AATATGCTGG CGTACAAACT GCGTTCCGGA ATCAACGAGA CGCTAGTGCA GAATCGAACC
AGCGCCGGCA GCGCCTGGAC CAGCGGCGCG ACCAGCTATG GCAGTAATGA CTACGATATT
TCCGACCTGA AAACGCCATA CAGTGACGAG TTGTCGCTGG GGCTGTCGCA GCGGGTGTAT
GACACCGTCT GGACGCTGAA ATGGGTGAAC CGTCAGGGTC GCGACCAGTT TGGCCGCGCC
AACAGAACCG ATGACAGCGG CCAGCGTTAT TACTACCTGA CCAACGACGC CCGCACCGAA
GGCAACACAG TGTCGCTGAC GGTAGAGCCC ATCAGCCCGT ATAAACTGAA ATACGCCGAC
ATTCGCTGGG GTCTCAGCGC CAGCATGGCG GATAACAAGA GCAGCTCACA GACTTACTAC
GACCAGAGCA ACATGGACGA CAACAAGGTA ATCTTTAAAG GACGCCTGAC CGATCGCCGG
GACATGGACG CACTTGACTA CAATACGCCG TGGTCGGTCG CGCTGAACAT CAACACCTAT
TTCCCGGCCG TTCGTCTGAA CTGGGATCAT AACCTCACCT ATACCTCGGG CTACAAAGGC
TACCGCACCA CCAGCGTGAC CTGCTCCGGC AGTACCAGCA GCGTCAGCGC CTGTGGCGAT
TACAGTGGCA GCGCTACGTT GTATACCGAG CGCAAATATC AGGACTACCT CTCCTATGAC
TGGCGTTTCA ACTACTCGCT GCCGACTTAC AAAAACCAGT CGCTGGACCT GACGCTGGAT
GTGATCAACG TGCTCGACAA CGTGATCGCC ACTTCGCAGG AGTCCACCGG CAATACGGTG
ACCTACAAGC TGGGTCGTCA GTTCTGGCTG GGCGTGGCTT ACAACTGGTA A
|
|---|
| Protein sequence | MNKHLYLMMI LGVSSTATAA GQTDQTENTA TDKPATTEKK HADEDTILVR STPTSQSMGT
QIINSEQIQR RPTRNGSVTE LLRSNPNVRF SNDLDSSTTP GELAPENVSF HGEKFYQNNY
MIDGLSNNNV INPGANNGQL TNTPDGYSPT DLPAGGAQSF WINSELIEQL QVFDSNISAK
YGDFTGGVVD AKLKDPKLDR ASGKISYRTT RDSWARYHID DDIEGDFYSA SQLYYQPKFR
KNFYSATFNQ PLSDKAGFIF AYNRQQSTIP FYNSVMDEWV KQTREAETYL LKGTYLADNG
DIFRLTGMYA PHESGYYKKD IKNGGYTNTG GGYRGNIEWE HNADWGKVSS LAGYQFEENR
IEHESDTYQS WYRYNLSSRF VSNVVDWGTG IPGRNSQLSG IGGYGKYATE KRTFTFKQDY
ELNPLALWGT SHQLDMGWQV DSYHAQYRRF SDVYTSRNTP TISTSVVCQT GDAFCINGEQ
YFRSRNLFPA RQVEGSYVNY AVYLQDSVSY KNLEVTPGVR LQYDDYLKNL NLAPRLAASY
DVFGDRTTRV FGGANRYYAQ NMLAYKLRSG INETLVQNRT SAGSAWTSGA TSYGSNDYDI
SDLKTPYSDE LSLGLSQRVY DTVWTLKWVN RQGRDQFGRA NRTDDSGQRY YYLTNDARTE
GNTVSLTVEP ISPYKLKYAD IRWGLSASMA DNKSSSQTYY DQSNMDDNKV IFKGRLTDRR
DMDALDYNTP WSVALNINTY FPAVRLNWDH NLTYTSGYKG YRTTSVTCSG STSSVSACGD
YSGSATLYTE RKYQDYLSYD WRFNYSLPTY KNQSLDLTLD VINVLDNVIA TSQESTGNTV
TYKLGRQFWL GVAYNW
|
|---|
| |