| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3249 |
|---|
| Symbol | |
|---|
| ID | 8120877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 3696363 |
|---|
| End bp | 3697319 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644853627 |
|---|
| Product | cytochrome c nitrite reductase, NrfD subunit |
|---|
| Protein accession | YP_003005548 |
|---|
| Protein GI | 251790827 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
|---|
| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGATG CCTTTCATTT TCATTCGCTG GTGTGGGACT GGCCGATCGC CGTTTACCTG
CTGTTGGTGG GGATCTCATC CGGGATGATG GTGTTGACGT TGCTGTTTCG CCGCTACCTG
CCCGCGGAAA ATCAACACGC CAACCCGTTG ATTACCGCAA CGGCCATCGT CGCACCGCTG
TCGGTGATTG TCGGGCTGGT TATCCTGATT TTCCACCTCG CCCGCCCCAT CACCTTCTGG
TATTTGATGA TTTTCTATAA TCCCCATTCC ATCATGTCGC TGGGGGTGAT GCTGTTTCAG
GTGTACATGC TGGTGATGTT CCTGTGGATT GCCAGCCTGT ATCGCCAACC GCTGCTGGCC
TGGAGCGAAC GCCGGTTGCC GGCAGCGTTG CACACGTTGC TAAACCGGGT GGTCGCTCTG
GTAACCCGCG GCATACGTCC GGTGGAAAAT GTGCTGCTGG TGCTGGCATT GCTGCTCGGC
TGCTATACCG GCTTTTTGCT CTCGGCGTTG AAGTCGTTCC CGTTGCTGAA TAACCCGGTG
TTGCCGGTGC TGTTTCTGGT GTCCGGCGTC ACGTCCGGCA TCGCGGTGTT GATGATGGTC
GGCACCTCGG CGCGCAGCCG TCGTGATTGC CCGCAGACTC TGCACCTGTT GCACCACCTG
GAAAAACCGG TCGCCTTGAT CGAGCTGTTC CTGCTGTTTG CTTTCTTTAT CGGCCTGATG
CTGGGCGGCG GCCAGAAAGC GGTGGCGGCG CAGGTTGCGC TGAGCGGATT CTGGGGCGGT
GTGTTCTGGA TCGGTATTAT CGGCATCGGC ATGTTGGCAC CGCTGGCTGC GGGCAGCCTG
CCTGCAATGC AACGCCGTAT CACCGCCCTG CCGCGCATCG CCGCCGGCCT GACGCTGCTG
GGCGTATTCC TGCTGCGGCT GTTCGTGCTG TATGCCGGCC AGATGACGGT AGCCTGA
|
|---|
| Protein sequence | MHDAFHFHSL VWDWPIAVYL LLVGISSGMM VLTLLFRRYL PAENQHANPL ITATAIVAPL
SVIVGLVILI FHLARPITFW YLMIFYNPHS IMSLGVMLFQ VYMLVMFLWI ASLYRQPLLA
WSERRLPAAL HTLLNRVVAL VTRGIRPVEN VLLVLALLLG CYTGFLLSAL KSFPLLNNPV
LPVLFLVSGV TSGIAVLMMV GTSARSRRDC PQTLHLLHHL EKPVALIELF LLFAFFIGLM
LGGGQKAVAA QVALSGFWGG VFWIGIIGIG MLAPLAAGSL PAMQRRITAL PRIAAGLTLL
GVFLLRLFVL YAGQMTVA
|
|---|
| |