| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4631 |
|---|
| Symbol | |
|---|
| ID | 8022325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1292206 |
|---|
| End bp | 1293306 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644833408 |
|---|
| Product | porin Gram-negative type |
|---|
| Protein accession | YP_002984542 |
|---|
| Protein GI | 241666183 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0562233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0152866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAA CCTTGTTCGC CATTGCGGCG ATGAGCCTGG CTGGCACCGC TGCGGCCCAG
AGCAACGTGA CGCTGTACGG CAGCATTGAT GAAGGCGTGG CCTACATCAA CAGCCTCAAG
AGCAGCGCGT CTAGCGGCTC GGCGCTGCGC ATGGACCCCG GCACCATGCA GCCGGACCGT
TTCGGCCTGC GCGGCTCGGA AGATCTCGGC GGCGGTACGC AGGCCATCTT CCAGTTGGAA
TCGGGGTTTC TGGGCGACAC CGGCAGCAGC GTGGTCGCCG GCAAGCTGTT CAACCGCACG
GCGTGGGTGG GCCTGACGAA CGATCGCTTG GGCAATATCC AGCTTGGCCA CCAAGCGGAC
TTCATGTTCG ACTACCTCGG CCGCCTGAGC AACGGGTTCC AGCTCACCAA TTTCTACCTG
TTCCACCCCG GCAACTTCGA CAACCTGGCC AACCAGTTCC AGATCGACAA CGCCGTGCGC
TACGTCTCGC CCATCTTCGG CGGCCTGCAA CTGGGCGGCA TGTACGGCTT TGGCGAGGTA
CCCGGTTCGC CGTCGAAAAG CCGCAGTTAC AGCCTCGGTG CGTACTACAC CAACGGCGGG
TTCCGTGCAG CCGCGGCTTA TACCGCGTCC AATGACCGCG CGCTGGACAT CGCCGGTCGC
CTGGGTATCA CGAACACGCT CGGCACGACG CTCGTGCCCG GCGTGATGAC GCCGATGAGT
TCGGTCAAGT CGTTCGGTGC CGGCACGCTG TATCAGTTCA GCAACCTGCC GGTCCAGATC
AACGCGGTCT ATACGCAGAC CCGCATCACG CTGAGTGGCG CCAACGCCCG CGCGCAAAAC
GTCGACCTCG GCACCGCGTG GCATTACAGC GCCGCCAATA CGCTCAACGT GGGCTATACC
TTCAGCAAGT ACGAGGGCGC CCGCTGGAAC CAGTTCAGCC TCGGCAACGT GTACGCGTTT
TCCAAGCGCA CGCAGGTGTA CGTGCAAGGT ACGTATCAGC GTGCGTCCGG CGATGCGCAG
TCTGCTGCCA TCAACGGCGT AGGTGTGGCG GCGCAGCGCA ACCAGATGGT TGTCAGCACC
GGGGTGCACC ACTCGTTCTG A
|
|---|
| Protein sequence | MKTTLFAIAA MSLAGTAAAQ SNVTLYGSID EGVAYINSLK SSASSGSALR MDPGTMQPDR
FGLRGSEDLG GGTQAIFQLE SGFLGDTGSS VVAGKLFNRT AWVGLTNDRL GNIQLGHQAD
FMFDYLGRLS NGFQLTNFYL FHPGNFDNLA NQFQIDNAVR YVSPIFGGLQ LGGMYGFGEV
PGSPSKSRSY SLGAYYTNGG FRAAAAYTAS NDRALDIAGR LGITNTLGTT LVPGVMTPMS
SVKSFGAGTL YQFSNLPVQI NAVYTQTRIT LSGANARAQN VDLGTAWHYS AANTLNVGYT
FSKYEGARWN QFSLGNVYAF SKRTQVYVQG TYQRASGDAQ SAAINGVGVA AQRNQMVVST
GVHHSF
|
|---|
| |