| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4556 |
|---|
| Symbol | |
|---|
| ID | 8022244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1196024 |
|---|
| End bp | 1197109 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833329 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_002984469 |
|---|
| Protein GI | 241666110 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.241944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0605665 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC GATGGTTGTT TGTGCTCTCT GTGATCGGCG CGCTGGCGGG AATTGGCGCG
GCGATCTACT ACGCGCGGCA GCGCCCGCCG TTGCCACCCG TCTTCCAGCC GGCAGCCAAT
CCGTACGCGA CGGGCATCTA CGCCAACGGC ATCGTCGAAA GCGATCAGCC CAGTGGTGCC
AACCTGAACC TGTATGCCGA AGTGTCGGGC ACCGTCGCGC GCATCGCCGT GCAAGAAGGG
CAGGCAGTCA AGCGCGGCGA CGTGCTGATC CAGATCGAAG ATTCCGTGCA GCGCGCCCTG
ACCGCGCAAC AGCAGTCGCA AGCGGATGCC GTTGATGCGC AGTTGAACGC GCTGCTGGCC
CAACCGCGCA GGGAAGCGCT GGAGGTCACG CGTGCACAGG TGGGTGCCGC AGATGCCGGC
TTGCGCACCG TGCAGGATCA GTTGGACAAG CTTGAAGCGG CCGCCCGGCT CAATCCCAAG
GCAGTCAGTC GCGATGCAAT GGACAACGCT GCCAACGCGG TACGGGTGGC ACACGGCAAT
CTCGTTGTTG CCCAGCGTCA GTACGACCTG ACGCGCGCCG GCGCCTGGAG CTATGACATC
CGCACGCTGC AAAAACAGCG CGATGCCTTG CAGAAGGGCG CGGCGGCGGC AGCAGCGCTG
CTCGAAAAGT ATGCCGTGCG GGCGCCGATG GACGGTGTTG TCATGTCCGT CAATACAGCA
ATGGGCGGCT ATGTATCGCC ACAGGGCACC TATGACGCCT ACACGCGGGC CAACGTGCCA
CTCGTCACGA TGAGCGCCGG GCAGAACAAG CTGGCCGTGC GCGTGTATGT GGATGAGATT
CTGGTGCACC GCCTTCCGCC CGGCACGGTG CAGGCACGCA TGTTCGTGCG CGGCACCGAC
GTTAGCGTGC CGCTGGAATT CGTGCGCGTG CAGCCGTACG TGTCGCCCAA GATTCAGTTG
TCCGACCAGC GCGCCGAACG CGTGGATGTG CGCGTGCTGC CGTTGCTTTT CCGTTTCAAG
CAGCCTGACA AGCTGGCCGT CTATCCGGGC CAACTGGTCG ACGTCTACCT GCAGGGGGCG
TCGTGA
|
|---|
| Protein sequence | MKIRWLFVLS VIGALAGIGA AIYYARQRPP LPPVFQPAAN PYATGIYANG IVESDQPSGA
NLNLYAEVSG TVARIAVQEG QAVKRGDVLI QIEDSVQRAL TAQQQSQADA VDAQLNALLA
QPRREALEVT RAQVGAADAG LRTVQDQLDK LEAAARLNPK AVSRDAMDNA ANAVRVAHGN
LVVAQRQYDL TRAGAWSYDI RTLQKQRDAL QKGAAAAAAL LEKYAVRAPM DGVVMSVNTA
MGGYVSPQGT YDAYTRANVP LVTMSAGQNK LAVRVYVDEI LVHRLPPGTV QARMFVRGTD
VSVPLEFVRV QPYVSPKIQL SDQRAERVDV RVLPLLFRFK QPDKLAVYPG QLVDVYLQGA
S
|
|---|
| |