| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4555 |
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| Symbol | |
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| ID | 8022243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | - |
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| Start bp | 1194552 |
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| End bp | 1196027 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644833328 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002984468 |
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| Protein GI | 241666109 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.163677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0686042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAGCGG CGGCGTGGGC GATAGGCGTC GCGCTTGTGG TTCCGGGCTG CGCCGTCGGG
CCGGATTTTC ATGCACCGCA GGCGCCTGGC GTCGATCGCT ATCTTCGTGA CGGTGAAGTT
GCGCAGCCCC CCTCGGCAGA CGGCGTTGCG CAGCGCTTCA CGGCGGCAAC CGTGCCGGCA
GACTGGTGGC ACGCTCTCGG TAGTCCCGCG CTTGATCTGG CCATGGAAGC CGCCATTACG
GCCAACCCCG GCCTGCAGCA GGCGCAAGCC AACCTGCGTG CCGCGCAAGA CCTGTTGCGA
GCCGGCGCGG GCGTGTTCTA CCCGCAGGTG GCGGGATCGG CCGATGTGTC ACGTCAGGCA
GCGGTGCCCG CCAGGCTTGG GCAGGCCGGG GTGCCAAGCC TTTTTACGCT GTGGACTCTG
GGCGCATCCA TCAGCTATGC GGTCGATCTC TTTGGCGGCA ATCGGCGTGC CGTGGAAGCC
CTGGCCGCGC AAGCGGAAGG ACAAAGGTAT GCGGTGGCCG CCGCCTACCT CACCTTGACC
GGCAATCTGG TGAACGCCGT GATCGCGCAT GCTGCCTATC GGGCGCAGAT CGACACCACG
CGCAGCCTGA TTGCCGTGGT GCGAGAGCAG ATGGAGATTG CACACGCGCA GGTCGAAGCC
GGCGTCGTGG CGCATGCCAG CGAGTTGAGC CTTGCTGCGC AATTGGCGTC GTTGGAAGCA
TCGCTGCCGC CGCTGGAGCA GAAGCGTGAC CAGGCTGCGC ATCTGCAGGC CGTCTTGACT
GGCCGATTTC CTTCCGAGGC AGATGCCGTA GACGTGGCGC TCAACGGGTT GCAATTGCCG
GCGGACTTGC CCAGCCTGGT GCCGTCTGAA CTGGTGCGCC AGCGGCCCGA CGTTCTGGCC
GCCCAGGCGC GCCTGCACCA GGTCAGCGCC GAGGTGGGTG TCGCAACGGC GGCGATGCTG
CCCAGTCTGA CCCTCAGCGC AGACTATGCC CGGATGAGCG GCCGAAGCGC TGACCTCTTT
GGTGCGAAAG CCGGCGCCTG GAGCGTGGGG GCGAACCTCG TGGCCCCACT GTTTGAAGGC
GGCACCCTGT ATTTCCGCCG TTCTGCGTCG CGGCAGGCGT TACAGGCTGC CGATGCCGGC
TATCGGCAGG TGGTGCTTGC TTCGTTTGAG CAGGTGGCCG ATGTGCTGCG GGCGCTGGAA
CACGATGCCG TGCAGCTTGA CGCACAGTTG CGCGCGCAGG CGGCGGCAAG TGCCGCACTG
GATGAGATCA ACGCCGACTA CCGTGCCGGC GTTGCCGGCT ATCTGCAGGT GCTCAGTGCC
GATCAGCAAT ACCAGCAAGC CGTGCTGGGC ACGCAGCAGG TGCGTGCACA GCGGCTGCAA
GATACCGTGG CGCTGTTCCT TGCGCTGGGC GGAGGCTGGC GTGGCGCCAG CATTGAAACC
CCAGTGGCGG GACATGTACA GCAAGCACCC GACTGA
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| Protein sequence | MKAAAWAIGV ALVVPGCAVG PDFHAPQAPG VDRYLRDGEV AQPPSADGVA QRFTAATVPA
DWWHALGSPA LDLAMEAAIT ANPGLQQAQA NLRAAQDLLR AGAGVFYPQV AGSADVSRQA
AVPARLGQAG VPSLFTLWTL GASISYAVDL FGGNRRAVEA LAAQAEGQRY AVAAAYLTLT
GNLVNAVIAH AAYRAQIDTT RSLIAVVREQ MEIAHAQVEA GVVAHASELS LAAQLASLEA
SLPPLEQKRD QAAHLQAVLT GRFPSEADAV DVALNGLQLP ADLPSLVPSE LVRQRPDVLA
AQARLHQVSA EVGVATAAML PSLTLSADYA RMSGRSADLF GAKAGAWSVG ANLVAPLFEG
GTLYFRRSAS RQALQAADAG YRQVVLASFE QVADVLRALE HDAVQLDAQL RAQAAASAAL
DEINADYRAG VAGYLQVLSA DQQYQQAVLG TQQVRAQRLQ DTVALFLALG GGWRGASIET
PVAGHVQQAP D
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