| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4473 |
|---|
| Symbol | |
|---|
| ID | 8022161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 1109538 |
|---|
| End bp | 1110884 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644833247 |
|---|
| Product | Zonular occludens toxin |
|---|
| Protein accession | YP_002984387 |
|---|
| Protein GI | 241666028 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4128] Zonula occludens toxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.272014 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000467157 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATTT TCCACGAAGG TTTGCCGCGT TCGGGTAAGA GCTATGAGGC GATGGTGAAG
CGCATTATTC CTGCGCTTCA GAAGGGCCGT AAGGTGTTTG CTCGGTTGAA TGGCATGGAT
TACGAGAAGA TTGCCGAGGT CGCTGAGATG CCGTTGGAGC GTGTGCGTGA GCTGCTGCAC
GAGATCCCGA AGGACAAGGT CAAGGAGTGG TTCAAGGTCG TTGAGAACGA CTCGCTTGTG
ATCTTGGATG AGTTGCAGAA TTTTTGGCCC GATAGTGGTC GGCGTTTGCC TCTCGATCAG
ATCGAAGCGA TTTCAGAGCA CGGGCATCGT GGTCTGGACA TTGTTGGCAT GGGGCAGCTG
CTTAAGGGTA AGGGTGGCTG CGATGCGAAC TGGGTGAACC GTTGCGATCA GAAGATTGTT
TTCGAGAAGC AGAATGCTCG TGGCGCAGAC GATAAGTACC GATGGACCGC CTATAAGGGC
AAGTTGGTCG ACGGGAAGAT TCAATTCCTG AAGGTCAATA CCGGTGTTGT GAGCTACGAC
AAGAAGTATT TCGGCACATA TGCGACGCGT GTCGACGGTT CGGACAATGC CGAGACGTAT
CAGGATGCGC GCACCAACGT GTGGAATAAC CCAGTGCTGC GCAAGTTCGC GCCGGCCATG
CTGATCTGTG CGGGCGTTGC TGTTTGGTAT CTGTGGCATG CCTTCAAGGG CGGTGGCTTG
GAGAAGAGCC TCGGTGGCCA CAAGGTCGAA AAATCCGTTA CGGTAACGAG TACTCCGCCG
GCGGTTACTT CGGCATCAGC TGTGCAGGTT GGTGCAGCTC AAGCTCAGCC TGCAGCTGCC
AAGAGTGCCC CCGTTAGCGA GTCGCAGAAG CAGGATGCGA TGGCGGACGA CTATGTGGCG
ACGATTTCGC AGAAATGGCG TCCAAGGCTT TCTGGCCTGG TTTGGGGCGC GAAGGGCGCG
CGCCTGGTGG TGGAGTGGTA TGACGAGAGT TTTCGCTTGA AGGAGCGGTT CAGCGCGGCC
CAGCTGGAGG AGTTCGGGTG GGGCGTTGCC AGGTCGGCCT ATGGTGAGCA CATCATTCTC
AGCAAGGGCG GTGTGCATAT CGCTGTCACC AGCTGGCCGA TGGAGTCCTT CGGCAAGGTC
AGTGAGGCCG ATAGCAGGGC GATTGCGAGC CAGTCGAGTG GCGGGGCACC AGGCTTCGGC
CCGTCCGATT GGCGGCGTGA TGAGGGTGTT TCTGGTGGTG GTGGATCTGT GGTCAGCAGG
GACAGCGGTT CAGATTGGCC TGGCTATGGT GCCGATGGCT TGGTCAAGCA TGCCAAGCCT
GTGCGGTCGA TCTTGACATC CGGTTGA
|
|---|
| Protein sequence | MFIFHEGLPR SGKSYEAMVK RIIPALQKGR KVFARLNGMD YEKIAEVAEM PLERVRELLH
EIPKDKVKEW FKVVENDSLV ILDELQNFWP DSGRRLPLDQ IEAISEHGHR GLDIVGMGQL
LKGKGGCDAN WVNRCDQKIV FEKQNARGAD DKYRWTAYKG KLVDGKIQFL KVNTGVVSYD
KKYFGTYATR VDGSDNAETY QDARTNVWNN PVLRKFAPAM LICAGVAVWY LWHAFKGGGL
EKSLGGHKVE KSVTVTSTPP AVTSASAVQV GAAQAQPAAA KSAPVSESQK QDAMADDYVA
TISQKWRPRL SGLVWGAKGA RLVVEWYDES FRLKERFSAA QLEEFGWGVA RSAYGEHIIL
SKGGVHIAVT SWPMESFGKV SEADSRAIAS QSSGGAPGFG PSDWRRDEGV SGGGGSVVSR
DSGSDWPGYG ADGLVKHAKP VRSILTSG
|
|---|
| |