| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4417 |
|---|
| Symbol | |
|---|
| ID | 8022105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1048534 |
|---|
| End bp | 1049787 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833191 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_002984331 |
|---|
| Protein GI | 241665972 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0828859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACA TCGTCATCGT CGGCGCCGGC ATATCCGGCG TCACCACTGC TTACACGCTC
TCGCAACTCG GTTATCAGGT CACGGTACTC GACCGCCACC TGTATCCGGC CATGGAAACA
TCGTTCGCCA ACGGCGGGCA GCTTTCCGCC AGCAACGCTG AAGTCTGGAA CAGCACTGGC
ACGCTGCTCA AGGGCATCAA ATGGATGCTG CGCAACGATG CCCCGCTGCT GCTCAATCCC
AAGCCCTCGT GGCACAAATA CTCGTGGATC GGCGAGTTCG TGGCCAGCAT CGCGCACTAC
CGCCGCAACA CCATCGAAAC CACACGCATG GCCATCGAGG CACGCAAGCA TCTGTTTGCG
ATGGCGGAAC GCGAGCAGAT CGATTTCGAC CTGCAGAAGC GCGGCATTCT GCACGTCTAT
CACGACAAGG CCAGCTTTGC GGCAGCAGGC AAGGCCAACG CCCTGCTCGT CGCCGGCGGC
CTTGAGCGCC ACGCCGTGAG CCCCGAGGAG ATTGCCGCCA TTGAGCCGAC GCTACGCGGC
AACTACTACG GCGGCTACTT CACCGAATCC GACGCCACCG GTGACATCCA CAAGTTCACG
CGGGGCCTTG CGCAGGCCTG CGAAAGGCGC GGCGTGCGCT TCATGCAAGG CGTGGATGTG
CGCGATGTGC AAACCACTGA AGGCGGCGTC AGCCTCCTGC TGCAGACCAC GCTGGATGAC
CGCCTTTCCA CCAGTGCGGC GAATATCGTT CAGGACCTTG CCGCCGATGC GATGGTCGTC
TGCGCGGGCG TGGGCAGCCG GCATATCGCG CAACTGGTGG GCGATCGCAT CAACGTGTAT
CCGGTCAAGG GTTATTCGAT CACGGTGCAC CTGGACGATG AAGCCAGCGT GCAAGGCGCG
CCGTGGGTCA GCCTGCTGGA TGAGAGCGCG AAGATCGTGA CAAGCCGCTT GGGCACTGGC
CGGTTCCGCG TGGCCGGCAC GGCGGAGTTC AATGGCTACA ACCGCGACAT CCGCGCCGAC
CGCATCGAAC CCCTGGTGGC CTGGACGCGC CGCAACTTTG CGATTGGCAC GTCGCGCGTG
GTGCCCTGGG CCGGCTTGCG CCCGATGATG CCGGACATGA TGCCGCGCGT CGGCCGTGGC
AGGCACGCGC GCGTGTTCTA CAACACAGGC CACGGGCACC TCGGCTGGAC GCTGTCCGGC
GCCACTGCCG CGATGGTGGG CGACGTGATC GCGCGAGATT GCCCGGTGCA TTGA
|
|---|
| Protein sequence | MTHIVIVGAG ISGVTTAYTL SQLGYQVTVL DRHLYPAMET SFANGGQLSA SNAEVWNSTG
TLLKGIKWML RNDAPLLLNP KPSWHKYSWI GEFVASIAHY RRNTIETTRM AIEARKHLFA
MAEREQIDFD LQKRGILHVY HDKASFAAAG KANALLVAGG LERHAVSPEE IAAIEPTLRG
NYYGGYFTES DATGDIHKFT RGLAQACERR GVRFMQGVDV RDVQTTEGGV SLLLQTTLDD
RLSTSAANIV QDLAADAMVV CAGVGSRHIA QLVGDRINVY PVKGYSITVH LDDEASVQGA
PWVSLLDESA KIVTSRLGTG RFRVAGTAEF NGYNRDIRAD RIEPLVAWTR RNFAIGTSRV
VPWAGLRPMM PDMMPRVGRG RHARVFYNTG HGHLGWTLSG ATAAMVGDVI ARDCPVH
|
|---|
| |