| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4379 |
|---|
| Symbol | |
|---|
| ID | 8022067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1007243 |
|---|
| End bp | 1008505 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833154 |
|---|
| Product | Patatin |
|---|
| Protein accession | YP_002984294 |
|---|
| Protein GI | 241665935 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.375815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.227942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAC CAAAACTACG CGTGGCCGCA ACCAAGCGGC CCACGCCGGC AGAGTCGTCA
CGCCCCGCCG ATGCGCCGCT CACCACGGCG CAGCGCATCG TGCTCCCGGC GTACGAGAAC
ATCGCGCTGG TGCTGCAAGG CGGCGGCGCG CTTGGCTCGT ACCAGGCCGG CGTGTTCGAA
GGGCTGGACG AAGCCGGTAT CGTGCCGAAC TGGATTGCGG GCATCTCCAT CGGGGCATTG
AATACGGCCA TCATTGCCGG CAATGCGCCC GAGCATCGCC AAGCAAAGCT GCGTGAGTTC
TGGCAGATCA TCACGCAGCC GACGTTCTCG CCGCCGCTGC CCGACATCCT GGAAAACGCC
TGGTTTGACG GCAACGCGCA TCTGCGCAAA TGGCTGACCG CCATGCAGGC CGCCGACACG
CTGCTCGAAG GCCAGCGCGG CTTTTTTACA CCGCGCTTTC CTGCACCATT GCCTGCCAAC
GAAGTCGACC CGCTCGAAGC CAGCTACTAC GACACCGCGC CGCTCAAGGC GACGCTGGAA
CGCCTTTGCG ATTTCGACCG CATCAACGAC GGTGGCATCC GCGTATCGGT GGGGGCTGTG
AACGTCCGCA CCGGCAATCT GGAAGCGTTT GACAACACCG AGCGCCGACT GCGCGCGGAG
CACTTCATGG CATCCGGCGC GCTGCCGCCG GGCTTCCCTC CCGTGCTGAT CGACGGCGAG
TATTACTGGG ATGGCGGTGT CGTCTCCAAC ACGCCACTGT CGTATGTGCT GGGCTCCAAG
CCGCGCCGCG ACACGCTGGT GTTCCAGGTG GACCTCTGGA GCGCACTGGG CCCGGTGCCC
AATACGATGA TCGGCGTGGC CAGCCGGCAG AAGGACTTGC AGTACTCCAG CCGCACGCGG
CTTACCACCG ACTGGATGGA ACGTTCGCAA TCCACGCGCC GGCTAATACG CAAGCTGCTC
GACCACCTGC CGCCTAAAGA GTTTGAGCGC ACCCAGTGGT ACAAGCACGC GCAGGAGATG
GCCTGTACCA AGCGCTACAA CGTCTTCCAC CTCATCTACG CTGCCAAGGA ACACGAAGGG
CCGGGCAAGG ACATCCAGTT CGGTCCATCG ACCATGCGCG ACCACTGGGC CTCGGGCCTG
GCGGATATTC GCGAATCGCT CTCGCACCCG GAGTGGCTTG AGATGCCCGA TAACGACACG
GGCTTCATCA CGCATGACAT CCACCGCCAT CCGGGCGTGG AGCGGGAAGA CAAGAGGCTT
TGA
|
|---|
| Protein sequence | MPAPKLRVAA TKRPTPAESS RPADAPLTTA QRIVLPAYEN IALVLQGGGA LGSYQAGVFE
GLDEAGIVPN WIAGISIGAL NTAIIAGNAP EHRQAKLREF WQIITQPTFS PPLPDILENA
WFDGNAHLRK WLTAMQAADT LLEGQRGFFT PRFPAPLPAN EVDPLEASYY DTAPLKATLE
RLCDFDRIND GGIRVSVGAV NVRTGNLEAF DNTERRLRAE HFMASGALPP GFPPVLIDGE
YYWDGGVVSN TPLSYVLGSK PRRDTLVFQV DLWSALGPVP NTMIGVASRQ KDLQYSSRTR
LTTDWMERSQ STRRLIRKLL DHLPPKEFER TQWYKHAQEM ACTKRYNVFH LIYAAKEHEG
PGKDIQFGPS TMRDHWASGL ADIRESLSHP EWLEMPDNDT GFITHDIHRH PGVEREDKRL
|
|---|
| |