| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3976 |
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| Symbol | |
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| ID | 8021664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 557911 |
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| End bp | 559857 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644832764 |
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| Product | proprionate catabolism activator, Fis family |
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| Protein accession | YP_002983904 |
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| Protein GI | 241665545 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.966242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCCA CTGCACCCGA CCTGACCGAC CGCCCCCGCA TCTGGGCTTG CGGCATCAGC
CGCCTGAGCG ATCTCTTCCT CGATATTGCC GCCGAGTACA ACGACCGCGC CGAGCTGCGC
GTCATCACAC GCGGCTTTGA AGACATCGTG CGCGAGATCG ACGCCGCTGG CGCCGAGCGG
CCCGACGTGG TGGTGGCGGG CGGCTCCAAC GGCGCCTACC TGAAGCCGCG TCTGTCGCTG
CCGGTGGTCG TCATCAACCC GACGGGCTTT GACGTGATGC ATGCGCTGGC CCGCGCCCGG
CGCGACGCGG AATCGGTGGC GCTCGTCACC CACGGCGACA CGCCCGAGGA GGTGCGCCGC
TTTGTCGCCG CCTATGGCAT GGACGTGGTG TTTGCCTCGT ACACCTCGCG CCAGGGCGCG
GAGAGTTGCG TGCTGGACCT GCGCGACCGC GGCGTGGGTG TGGTGGTTGG CCCCGGTCTG
GTGACGGACC TGGCAACGCA GGCGGGCATG AACGCCGTGT TCCTGTATTC GCGGGACTCT
GTGCGTGCGG CATTCGATAC CGCGCTGGAA GTCGTACAGG CCACGCGCCG CGAAACCCTG
CGCCGCCAGC GGTTGGACAA CCTGCTGCAG CATCTGCGTG ACGGTGTGGT CGCGCTGGAT
GCGCAGGGTC GCGTGGAGGC CATCAACCAG CGGCTGGCCA CGGCGTTGGG CATCGAGGCC
AAGCAGGCCA TCGGGCAACC GCTGCTCAGC ATTGCGCCCA ACCTGCTCGG CTTGCTGCCC
GATACCGACG GCGACACGCT GGGCACCGTG CAGGGCGTGA ACTACGTCAT CCACCGTGGC
CCGCTCACGA GCACCGGCAC CGGCGCCGCA GAAGGCACGG TGTTCACCTT CCAGGAATCC
CGCGCGGTGG AGCGGCTGGA CCGCACGCTG CGCTCACGCC AGCGCCCGCA GCAGTTCAGC
GCGCGCTATC GGCTCGAAGA CCTGGTGGGC GAATCGCTGG CGATGGAACG CGTGCGTACG
CTGATACGCC GCTATGCCAA ATCCGACGCC ACCGTGCTCG TGCTGGGCGA ATCCGGCACG
GGCAAGGAGA TGGTCGCGCA GGGGATGCAT CAGCTCAGCG CGCGGCGCGA TTTTCCATTC
GTCGCCATCA ACTGCGGCGC GTTTCCCGAA GCGCTGCTGG AAAGCGAACT GTTCGGCTAC
GAAGAGGGCG CCTTCACCGG CGCGCGCAAG GGCGGCAAGA CGGGGCTGAT TGAAGCCGCG
CACCGCGGCA CACTGTTTCT CGATGAAATC GGCGAGATGC CGCTGCCGCT GCAAAGCCGC
CTGCTGCGCG TATTGCAGGA GCGCGAGGTG GTGCGGCTGG GTTCCACCGA GCCCACCCGC
GTCGATATTC GCGTGGTGGC CGCCACGCAT CGCGCGCTGA CGGACGCCGT GCAAGCCGGC
ACCTTCCGCG CGGACCTGTA CTACCGCCTC AATATCCTCA GCATCGCGCT GCCCCCACTT
CGCGAACGCC CCGACGACGT GATGCCCCTG GCCGTTGAAC TGCTCGTGCA GGCCGCGCGC
CGCGATCCGC GCCTGCTGCT GCGCATTGCC GACACGGAAG AGGCTGCCCG CGTGCTGGCC
GGTGTTGCCG AGCCGCTGAG GCGCTACGCC TGGGCCGGCA ATGTGCGCGA ACTGCAGAGC
GTGGTCGAGC GGATTGCCGT TGAACTGGCT TACACCGAAG ACGCCAGCGC CATCACGCAA
GACGTGCTGC GGCTGATTGC ACCCGAAGTG TTTGCCCACG CCACACCGGG CAAACCGGCG
GTATTGACGC TGCGCGAGCG CAGCCGGGGC GTGGAAGCGG AAGAGATACG CGCAGCGCTG
GCCGCCCACG GCGGCGATCG GGATGCCGTA TGTGCCGCGT TGGGGATCAG CAAGACGACG
TTGTGGCGGC GGCTGCAGAT GGGCTAG
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| Protein sequence | MSPTAPDLTD RPRIWACGIS RLSDLFLDIA AEYNDRAELR VITRGFEDIV REIDAAGAER
PDVVVAGGSN GAYLKPRLSL PVVVINPTGF DVMHALARAR RDAESVALVT HGDTPEEVRR
FVAAYGMDVV FASYTSRQGA ESCVLDLRDR GVGVVVGPGL VTDLATQAGM NAVFLYSRDS
VRAAFDTALE VVQATRRETL RRQRLDNLLQ HLRDGVVALD AQGRVEAINQ RLATALGIEA
KQAIGQPLLS IAPNLLGLLP DTDGDTLGTV QGVNYVIHRG PLTSTGTGAA EGTVFTFQES
RAVERLDRTL RSRQRPQQFS ARYRLEDLVG ESLAMERVRT LIRRYAKSDA TVLVLGESGT
GKEMVAQGMH QLSARRDFPF VAINCGAFPE ALLESELFGY EEGAFTGARK GGKTGLIEAA
HRGTLFLDEI GEMPLPLQSR LLRVLQEREV VRLGSTEPTR VDIRVVAATH RALTDAVQAG
TFRADLYYRL NILSIALPPL RERPDDVMPL AVELLVQAAR RDPRLLLRIA DTEEAARVLA
GVAEPLRRYA WAGNVRELQS VVERIAVELA YTEDASAITQ DVLRLIAPEV FAHATPGKPA
VLTLRERSRG VEAEEIRAAL AAHGGDRDAV CAALGISKTT LWRRLQMG
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