| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3961 |
|---|
| Symbol | |
|---|
| ID | 8021649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 539779 |
|---|
| End bp | 540330 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832749 |
|---|
| Product | transcriptional regulator, HxlR family |
|---|
| Protein accession | YP_002983889 |
|---|
| Protein GI | 241665530 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1733] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00918513 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0163124 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC CCGAGACTCT CTCCACCACG CCGGCGTCCG ACCTGGTGCC GTCGATGGAT
CCGCCCTGTT CCATCGCGGC CGCGGTGTCG ATCGTCGGTG AGAAATGGAC GCTGCTGGTG
TTGCGCGAAG CGTTTTCGGG CGTTACGCGT TTCGATGAGT TCCTGCGCCG CACGGGGTGC
TCGTCGGCGA TCCTGTCGTC GCGGCTCAAG GCGCTGGTGA CGTACGGCAT CCTGCGCCGC
GTGCCTTACC AGGAGCCGGG CGACCGCGTA CGCGACGCGT ACAAGCTGAC GCGCGCGGGC
GTCGATCTGT TGCCCGCCAT CGTGGCGCTG ATGCAGTGGG GCGACCGGTA TCTCACGCCC
GACGGTGAAG GCCCGATCCT GCTGCGCGAT CGCGAGAGCG GCACGCCGAT TCACGTGGCG
CTGGTCAATG CATTGGGCGA GCCGGTCGCG CCCAAGAATT CGATGCGCGA GCCGAACCCG
CGTTATGGTC ACGGCAACGA CCCGGCATCC ACGGCACCCG CCCCCGCAGA CACGTCTGCG
GCCGACGAAT AA
|
|---|
| Protein sequence | MKTPETLSTT PASDLVPSMD PPCSIAAAVS IVGEKWTLLV LREAFSGVTR FDEFLRRTGC
SSAILSSRLK ALVTYGILRR VPYQEPGDRV RDAYKLTRAG VDLLPAIVAL MQWGDRYLTP
DGEGPILLRD RESGTPIHVA LVNALGEPVA PKNSMREPNP RYGHGNDPAS TAPAPADTSA
ADE
|
|---|
| |