Gene Rpic12D_3490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3490 
Symbol 
ID8021176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand+ 
Start bp37411 
End bp38034 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content64% 
IMG OID644832282 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002983424 
Protein GI241665065 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.20919 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGCG TCAAGAATGA AGACGAATTC GAGCTGCGCC GCGAAAGCGT GCTCGACACC 
GCTGCCGAGG CCTTTGCGGC CGACAGCTAC CCGAGCGTGT CGATGAACCA GCTTGCTGCC 
GCCTGTGGCG GCTCGAAGTC GCGCCTGTAT CACTACTACG AGGGCAAGGA GGCCATCCTG 
TTCGATCTGC TCGACCGCTA CACCAAGCGG CTGGCCGATC TCGTCGAGCG CGCGGAGCGC 
GACGCGCGCC ACGCCAGGCT CTCGGCCCGG GCTACGCTGC ACCTGTTGAT CCGCACGTTT 
CTTGCGGAAT ACGCGACCTC GCGCACGCGA CACGTGGCCC TGCTCAATGA TGTGAAGTAC 
CTGTCGCCGG ATCAGCGCGA CATCGTGCTT GCGCGCGAGC GCGATGTGGT GGCGGCCGTG 
GGACAGCAGC TCGGTGCGGC TTACCCTGAC AAGGTGGACG ACGCCAACCG CACGCCCGTC 
ACGATGATGC TGTTCGGCAT GATGAACTGG ACGTTCACCT GGCTCAAACC CGACGGACCG 
CTCTCCTATG AGGGTTATGC CGAGATGGTG ATCGACATGC TGGAGAACGG CCTTGGCCGG 
GGAGCCGCTC AGCGATCGTC ATAG
 
Protein sequence
MSRVKNEDEF ELRRESVLDT AAEAFAADSY PSVSMNQLAA ACGGSKSRLY HYYEGKEAIL 
FDLLDRYTKR LADLVERAER DARHARLSAR ATLHLLIRTF LAEYATSRTR HVALLNDVKY 
LSPDQRDIVL ARERDVVAAV GQQLGAAYPD KVDDANRTPV TMMLFGMMNW TFTWLKPDGP 
LSYEGYAEMV IDMLENGLGR GAAQRSS