| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3362 |
|---|
| Symbol | |
|---|
| ID | 8021047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3549307 |
|---|
| End bp | 3550995 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832156 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_002983298 |
|---|
| Protein GI | 241664938 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC AGAACCGCGA ACCGGTCAAT TATTTGGCGG GCGAAATGCC GCTGCACCGG
TATTGCGCCC ACCATGCGCA GCAAACGCCC GAGCGCATCG CCCTGTTGTG GTACGGCCGC
ACGATCTGCT GGCGCGAGCT GGACCAAGCC TCGACGCGGC TGGCAGTGCA GTTGCGGCGC
CTGGGCGTGA CACGCGGCGA TCGCGTTGCG CTGTTTCTGC ACAATTGTCC GCAAGCCATC
GTGGCGCATC TGGCCACGGC CAAGCTGGGC GGCATCGTTG TGCCGTGCGG GCCGCTGTCG
CGCCAACACG AGCTGCGCGA CCAACTGGCC GATTCTGGCG CCAAGATTCT GGTGGCCGCG
GCAGACCTGA TGCCGATCGT CGAGGCCGCC CGACTTGGCA CGTCGGTCAC GACCGTCATT
ACTACGCGCT ATGCCGATCT GCAGCCCTCG CAGCCGGCGT GTCGTAAGGC GCTGGCCGTG
CCGCCCGAGC TGATTGCCGC CGATGCCTCG TCCGCGCCGC CACTCAAGAA CAAGCCGGGC
GCCGCGCAGC TTGACCTGAT GCAGCTGATG GCCGAACCGG TGGATGTGGC CGAGCGCAAC
GCGGTGGCGG CTATCGAGGT GAGCCTGGAC GACGTTGCGC TGATGGTCTA CACGTCGGGC
ACCACCGGCC GCCCGAAGGG CGCCATGCTC ACGCACCGCA ACGCACTGTA CAAGACCGCC
GTCACGGTGC AGGTCAGCGG CATCCATGCC GCGGACGTGA TGCTGGCGGT GGCGCCGCTG
TCTCACATCG CCGGCATGCT GATGGGCATG AACGTGATGC TGTACTCCGG TGCGACGACC
ATCCTGCTCC ATCGGTTCGA TCCTCTGGCC GTGCTGCAGG CGATCGACCG CTACCGCGTG
ACACGCTGGT ACAGCATGAC GCCGATGAAT CTGGCGGTCA TGGCGCATCC GGACGCGGCG
CAGTACCGCA TGGAATCCTT GGTGGCCAAC CCATGCACCA GCTTCGGTGT CACCCTGACC
GAAGCGATTG CCGAGCAGTG GCGTGCTTTT GCCGGCCCGC AATGCCGCAT CTACGAAGCG
GCCTATGGGC TGTCGGAAAC CCACACCTGC GACGCCATCA CGCCCGCCGA GGCTCCGCGC
TGGGGTTGGC ACGGCAAGAT CGTCCCGCAG ACCGAGGTAT GCATCGTCGA CCCGCACACC
GGCGCGGAAT TGACCCCGGG CCAGGCCGGC GAGATCACCA TCCGCAGCCC CGGCGTGTTC
CGCGGTTACT GGCAGCGCGA CGATGCCACG CGTGCCGTCC TGCACAACGG CTTTCTGCGC
ACCGGCGATA TCGGCCAGGT CTCGCCCGAC GGCTACCTGC AATGGCAGGG GCGCATCAAG
GAAATGATCA AGGTGTCGGG CTACAGCGTG TTCCCGGAAG AGGTCGAGGC GCTGCTGTCG
CGCCACCCCG GCATCCGCCA AGTGGCCGTG ACGCCCATTC CCGATCCCGA CAAGGGCGAA
GTCGTGTGCG CGCACGTGGT ACCGATGAAC GGCGTGACGC TCTCGGAAGC CGAGCTGATT
GCATGGTCGC GCGACAACAT GGCGCCATAC AAGGTGCCGC GGCGCGTGAA GTTCCACGAT
GCGCTGCCCG CCACCGCAAC GGGCAAGGTG CTGCGAAGGT TGCTGCGCGA AGAAGCCGTC
GCCGCCTGA
|
|---|
| Protein sequence | MTIQNREPVN YLAGEMPLHR YCAHHAQQTP ERIALLWYGR TICWRELDQA STRLAVQLRR
LGVTRGDRVA LFLHNCPQAI VAHLATAKLG GIVVPCGPLS RQHELRDQLA DSGAKILVAA
ADLMPIVEAA RLGTSVTTVI TTRYADLQPS QPACRKALAV PPELIAADAS SAPPLKNKPG
AAQLDLMQLM AEPVDVAERN AVAAIEVSLD DVALMVYTSG TTGRPKGAML THRNALYKTA
VTVQVSGIHA ADVMLAVAPL SHIAGMLMGM NVMLYSGATT ILLHRFDPLA VLQAIDRYRV
TRWYSMTPMN LAVMAHPDAA QYRMESLVAN PCTSFGVTLT EAIAEQWRAF AGPQCRIYEA
AYGLSETHTC DAITPAEAPR WGWHGKIVPQ TEVCIVDPHT GAELTPGQAG EITIRSPGVF
RGYWQRDDAT RAVLHNGFLR TGDIGQVSPD GYLQWQGRIK EMIKVSGYSV FPEEVEALLS
RHPGIRQVAV TPIPDPDKGE VVCAHVVPMN GVTLSEAELI AWSRDNMAPY KVPRRVKFHD
ALPATATGKV LRRLLREEAV AA
|
|---|
| |