Gene Rpic12D_2854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2854 
Symbol 
ID8020525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3011439 
End bp3012494 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content60% 
IMG OID644831640 
Productintegrase family protein 
Protein accessionYP_002982796 
Protein GI241664436 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.820272 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCA TCGTCAAGAC GCCTTCCGGC ACGTGGAAGG CGGTCATCCG CAAGATCGGC 
TGGCCGACCA CGGCCAAGAC TTTCCGCACC AAACGCGACG CCGAGGATTG GGCTCGGCGC
ACCGAGGACG AGATGGTCCG GGGTGTGTAT TTGTCCCGTG GGCCGTCTGA GAAGCTGACC
GTCGCCGGCG CGTTGAGGCG CTATATGGAG GAGGTTTCGG TCACGAAGAA GCCGACGACA
CAGCGCAGCG AGCGCTTCAC GGCCCAACAC TTGGAAGCCT TCTTCGGGAA GTATTCGATG
GCGGCCGTCA GCGCAGACCT GGTCGCCAAG TACCGTGATG TGCGGTTGGC GGCGGGCAAG
TCGAACAACA CGGTTCGCAT TGAACTCGCG ATGCTGGGTC ACTTGTTTCG AACGGCGATT
CAAGAGTGGA GCATCGGCTT GACGTTCAAT CCGGTTGCCA ACATTCGCAA GCCTAGTCCG
GGGACCGGCC GCGATCGTCG TCTTAGTTTG GACGAGCAGG CGCGTTTATT CGCGGCTGTG
TCAGCCCACA GCAATCCGAT GCTGGGTTGG ATCGTGGGCT TGGCTGTAGA GACCGGCATG
CGGTCATCCG AAATCGCAAC GCTACGCCGC TCACAGGTCG ATCTGAACCG TCGAGTTGTG
AACTTGCGGG ATACGAAAAA CGGCTCCGCA CGAGTGGTAC CACTTACGCG CGCCGCCGCT
GATGTGTTGC GACTGGCCCT GAGCAATCCC ATTCGTCCAT TGGACTCAGA CCTCGTGTTC
TTTGGGGAGC CAGGGCGCGA CGGGAAACGG CGGCCCTATG TGTTCCAGAA GCTGTGGACG
AGCATTGTTC GCGATATAGG CTTGGCCGAC CTTCATTTCC ACGATCTCCG TCATGAAGCC
GTAAGCCGTC TCGTTGAGGC TGGTCTCAGC GATCAGGAGG TGGCCGCCAT AAGCGGGCAC
AAGTCCATGC AGATGCTGAA GCGCTACACG CACCTACGGG CTGAGGACTT GGTGGAGAAG
CTTGACGCAG TCAATCTTGG CGGTGGTTCT GCCTAG
 
Protein sequence
MATIVKTPSG TWKAVIRKIG WPTTAKTFRT KRDAEDWARR TEDEMVRGVY LSRGPSEKLT 
VAGALRRYME EVSVTKKPTT QRSERFTAQH LEAFFGKYSM AAVSADLVAK YRDVRLAAGK
SNNTVRIELA MLGHLFRTAI QEWSIGLTFN PVANIRKPSP GTGRDRRLSL DEQARLFAAV
SAHSNPMLGW IVGLAVETGM RSSEIATLRR SQVDLNRRVV NLRDTKNGSA RVVPLTRAAA
DVLRLALSNP IRPLDSDLVF FGEPGRDGKR RPYVFQKLWT SIVRDIGLAD LHFHDLRHEA
VSRLVEAGLS DQEVAAISGH KSMQMLKRYT HLRAEDLVEK LDAVNLGGGS A