| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2845 |
|---|
| Symbol | |
|---|
| ID | 8020516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3006770 |
|---|
| End bp | 3007525 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644831631 |
|---|
| Product | P-type conjugative transfer protein TrbJ |
|---|
| Protein accession | YP_002982787 |
|---|
| Protein GI | 241664427 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.13713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.308482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA AGACGCGAAT CACTGGCTTC ATCACTGCCA CCATCATTGC CACGCCGGCC
TTGGCCGGCA CTGTGGCCGG GACTGGCGGC TCCACCGAAG TCACGCAACT TATCAACATG
GTGCAGCTCG TCCAAAGCTA CGAGCAGCAG GTGCAGGCTT ACGTGCGCCA GGGCGTCCAG
GTCGAAGCCG AGCTGAAGAA CCTGATCTCC AATCCGACCT CGCTGCTGGG TAACGACGTT
GGCAACATGA TCAACACCAT TGGGTCGATC TACAACGGCG GGCAGTCCAT TGGCTACAAC
CTCGCGCAGA TCGACCGGAA TTTTTCGCGC ACGTTCAAGA GTCCCCAGGC CGACAATTTC
GCCAAGATGT TCACCTCCTG GCATCAAACC AATACGGACA CGCTCCAGTC TGCGCTCCGC
GCGATTGGAA CGCAGCGCGA CAACTATGCG TCGAGCCAAG CGGCCCTGAC CGACCTGTAC
AACCGTAGTC AAAGCACCAA CGGCAATCTG GATGCCCTGC AAACGCTCTC CCAGATCAAC
GTCCGCCAGA TCCAGGAGTT GCAGTCTTTG AAAGAGCTGA TGGCGACGCA AGCGACGGCC
GCGACGACCT ACATGGCGGC ACGGTCGGCG AGGGATCAAG CCAACGACAA GGTCAACGAT
GATCTTCAAA GGATCTTGTC CAACCCGGTT CCGAAGTGGC AGGACAGCGC GCCGCAGCAA
TTCAACAAGT TCAATTTCTA CAAGAGCTAC AACTGA
|
|---|
| Protein sequence | MKLKTRITGF ITATIIATPA LAGTVAGTGG STEVTQLINM VQLVQSYEQQ VQAYVRQGVQ
VEAELKNLIS NPTSLLGNDV GNMINTIGSI YNGGQSIGYN LAQIDRNFSR TFKSPQADNF
AKMFTSWHQT NTDTLQSALR AIGTQRDNYA SSQAALTDLY NRSQSTNGNL DALQTLSQIN
VRQIQELQSL KELMATQATA ATTYMAARSA RDQANDKVND DLQRILSNPV PKWQDSAPQQ
FNKFNFYKSY N
|
|---|
| |