Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2409 |
Symbol | |
ID | 8020073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 2529043 |
End bp | 2530566 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644831190 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_002982353 |
Protein GI | 241663993 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.262199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGATCA AGCATCTGCT GACCGACCAA CCGGATGATC CCCACCTGCC GAGCCAGGCC CGCCGCCAAT GGCTCACGCG CATGGCCAAG GCTGGCGCAG GCACGGTCAT CCTGAGCCTG GTGGGCCCGC AGATTGCGCG CGGCGCCAAC ATCGTCGCCG TACGCGTGTG GCCCGCCGAG GACTACACAC GCGTGACGAT CGAATCCGAC GTCGCGCTCA AGGCCACGCA TCAGCTCATC AAGGACCCGG ATCGGCTGAT GGTCGACATC GACGGGCTCG AACTGAACCC GACCTTGCGC GAGCTGGTCG CCAAGATCGC GCCGAACGAT CCGTACATCC GCCAGGTGCG CGTGGGTCAG AACCGGCCGA GCGTCGTGCG TCTGGTGTTC GACCTGAAGG AAAGCGTCAA CCCACAGGTG TTCACGCTGC TGCCGATTGC CGGCTATCGG AACCGGCTCG TGTTCGACCT GTACCCGACC AACCCGCCCG ACCCGCTGAT GCAGCTCGTG CAGGCCACCG AGGGCAAGCA GGAGCGCTTT GCTGCGTCCG GCGGCACGCC CATGCCGGCG CCGTCGGATG ACGATGATCC GATCGCCGCG CTGGCACGCC GCGACAGCAG CGCAAGCCCT ACCAAGCCAG CGATCGAAGA GCCGCAACCT CCGGCACTTG CCAGCCGCAC ACCGCCTCGC AAGGCGCCGC CTCCCACGTC GACGAATCCT CCATCGACGC TCGCCAACGC GCCGAACACG CCGCCGCAGG AGATCCTTCC CGAGCAACCC GTGCCGCGTG CGCCGTCGAG CGGCCCGCGC ATGCGCCGCC TGCTTACGGT CGCCATCGAC CCCGGCCATG GCGGCGAAGA CCCGGGCGCC ACGGGCGGCG CCGGCACGCA CGAGAAAGAC GTGGTGCTGT CGATCGCTCG CATGCTCAAG GCCAAGATCG ACGCCCAGCC CAACATGCGC GCCATGATGA CGCGCGATTC CGACTACTTC GTCCCGCTGG GCGTGCGCGT GCAGAAGGCG CGCCGCGTGC AGGCGGACCT GTTCGTCTCC ATCCACGCCG ATGCATTCGT CACCCCGGAA GCGCGCGGTG CCTCGGTGTT CGTGCTTTCG GATCGCGGCG CCTCCAGCGC GCAGGCCAAG TGGCTCGCCA ACAAGGAAAA CGCGGCGGAC ATGATTGGCG GTGCCAATCT CGGCTCGAAA GACGCCCAGG TCACGCGCGT GCTGTTGGAT TTGTCGACCA CCGCCCAGAT CGGCGACAGC ATGAAGGTCG GCAAGGCCGT GCTGGACCAG ATCGGCGGCA TCAACCGGCT GCACAAGGGG CAGGTGGAGC AGGCGGGCTT TGCGGTGCTC AAGGCGCCCG ACATTCCGTC GATCCTCGTC GAGACGGCCT TCATCTCCAA CCCGGAAGAA GAAGCCAAGC TCAACGACCT GGGGCACCAG AACCAGCTTG CCGAGGCGAT CCTGCGCGGT ATTCGCGCCT ACTTTGCCAA GAACCCGCCA TTGTCGCGCA ACCCGGGCGT CTGA
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Protein sequence | MLIKHLLTDQ PDDPHLPSQA RRQWLTRMAK AGAGTVILSL VGPQIARGAN IVAVRVWPAE DYTRVTIESD VALKATHQLI KDPDRLMVDI DGLELNPTLR ELVAKIAPND PYIRQVRVGQ NRPSVVRLVF DLKESVNPQV FTLLPIAGYR NRLVFDLYPT NPPDPLMQLV QATEGKQERF AASGGTPMPA PSDDDDPIAA LARRDSSASP TKPAIEEPQP PALASRTPPR KAPPPTSTNP PSTLANAPNT PPQEILPEQP VPRAPSSGPR MRRLLTVAID PGHGGEDPGA TGGAGTHEKD VVLSIARMLK AKIDAQPNMR AMMTRDSDYF VPLGVRVQKA RRVQADLFVS IHADAFVTPE ARGASVFVLS DRGASSAQAK WLANKENAAD MIGGANLGSK DAQVTRVLLD LSTTAQIGDS MKVGKAVLDQ IGGINRLHKG QVEQAGFAVL KAPDIPSILV ETAFISNPEE EAKLNDLGHQ NQLAEAILRG IRAYFAKNPP LSRNPGV
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