| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2310 |
|---|
| Symbol | |
|---|
| ID | 8019974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2431119 |
|---|
| End bp | 2432786 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644831093 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002982256 |
|---|
| Protein GI | 241663896 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000248825 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGCGC CTGAGCCCGC CTCTGCAACC TTGTCGCACG GAGCCCGGCT GCGCGCGGCG
CGCTGGGGGC TTTGGCTGTC TGCGGTGCTG GTGGGCGTGG GCGTCTCGTG GTTTGCCGCC
TGCTTCGTGG CCGACACGAT GAGCGCACGC GACATGCAGC AAATGGTCGA GGCGCGGCGC
CAGCTTGCCG CCCAGGTGGC GGAGGGGATG TCGAGCCAGA TCACGGCCGA CGTGGCCTTG
CTGCGCGCGC TGCCGCAGAC GCTGGCGCAG ATCGACGCCA TCCCGCGCGC GGTGCAGCGC
GTCGATACCC GGCGCTGGAA TCTGATGGAC CAGGGCTCGC GTGCCCAACA GGCGATGTCA
CACCCGGAAG TGGTCGACAT CGACGCATTC CTGAACGCCA CCGCCGGCAA TCTCGGGCTG
GACTACGTAT GGGTCGTGAA CCAGAACAAT TACGTGGTGC TGGCCAATAA CGCCGGCCGT
GCCGATTCGC TCGTCGGCGT GCAGTCGAGC ATGCAGCCCT ATATGAAGGA GGCATTGCTG
GGCGGCCTGG GCGAGCAGTT CACCGTCGGG CGGGTGACGG GCCTGCCGGG CCTGTTCTTC
GCCGCGCCGG TGTATGACGC CGGTGGTTAC CTGGTCGCGG TCATGGGCAC CAAGGTAAGT
CTGTCGCGGT TGCAGCATTG GGTGTCGCAC CCGACATCGC TGGTGACCGA TCCGAACGGT
TTGATCATTT TGTCCACGGA TGCGTCGCTG GTGGGCAAGA TTCTGCCGGA TGCGCGCCTG
CAGCGCATGG GCGCCACCGA CCGCTACAAC GCTTACCAGC GCGTCGACTT CGAGCCCTGG
CCGTATCAGC CTACCGCGAA GGCGCATCAC GACGTGCCCA GCTGGGTGCC GGCCGAAGTG
CGCGATGCGC TGGCCTGGCG CGAGGGCAGT GCGATGCCAT CGCTCACCGT GTCGCGCAAT
GCGAGCGCAG ACCTCACCGT CGTCGTGGCC GAGCCGCTGC CGGGGTGGAG CCAGCAGATC
GCCAACCACG CGCGCAATCG CATGATTGGC TTTGTGCTGT TCGTGAGCGT GCTGGCGACG
TTCGTGCTGG TGGCGTGGTC TTTGGTGCGC GAGCGGCAGC ACCACCGCGT GACGCGCCAT
CTGAACCAGC GGCTGCAGCG CACCAACAGC GCGCTCGCCA ACGAGGCGCA TTTCGACCAT
CTGACCGGTG TGCTGACGCG CCGCCGCTTC CTGGCGCTGT TCGATACGGT GCTCGCGCGT
GCGCACAATC GTGCCGAACC GCTTGTGCTC GTGCTGGCCG ATCTGGATCA CTTCAAGCGC
ATCAATGACA CATGGGGCCA CGCTGTGGGG GACATGGCGC TGCAGCGCTT TGCGTCGCTT
GCCACGGGCG TACTGCGCAG CAGTGACTTG GTCGGGCGCT TGGGCGGCGA GGAATTTGCC
ATGGTGATGG GCCGCACCAC GCTGGAAACC GCCACCGAGG TGGCGGAGCG CCTGCGTACG
GCGGTGGCCG AGACGGACGA AAGCTTCCCG ACCGGGCTGT CGATGACCGT CAGCATGGGC
ATGACGGTCT GCCGGCCGGG CGATACTGCC TCGGAGATGC TCAAGCGCGC CGATCTGGCG
CTGTATCGCG CCAAGGAAAG CGGGCGTAAC CGGCACGTGG CCGGCTGA
|
|---|
| Protein sequence | MKAPEPASAT LSHGARLRAA RWGLWLSAVL VGVGVSWFAA CFVADTMSAR DMQQMVEARR
QLAAQVAEGM SSQITADVAL LRALPQTLAQ IDAIPRAVQR VDTRRWNLMD QGSRAQQAMS
HPEVVDIDAF LNATAGNLGL DYVWVVNQNN YVVLANNAGR ADSLVGVQSS MQPYMKEALL
GGLGEQFTVG RVTGLPGLFF AAPVYDAGGY LVAVMGTKVS LSRLQHWVSH PTSLVTDPNG
LIILSTDASL VGKILPDARL QRMGATDRYN AYQRVDFEPW PYQPTAKAHH DVPSWVPAEV
RDALAWREGS AMPSLTVSRN ASADLTVVVA EPLPGWSQQI ANHARNRMIG FVLFVSVLAT
FVLVAWSLVR ERQHHRVTRH LNQRLQRTNS ALANEAHFDH LTGVLTRRRF LALFDTVLAR
AHNRAEPLVL VLADLDHFKR INDTWGHAVG DMALQRFASL ATGVLRSSDL VGRLGGEEFA
MVMGRTTLET ATEVAERLRT AVAETDESFP TGLSMTVSMG MTVCRPGDTA SEMLKRADLA
LYRAKESGRN RHVAG
|
|---|
| |