| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1519 |
|---|
| Symbol | |
|---|
| ID | 8019164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1604330 |
|---|
| End bp | 1605370 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644830296 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002981477 |
|---|
| Protein GI | 241663117 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0240465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA TCACAAAGAC GCGTCTGTCC GTGCTTGCCG GCGCATTCGC CATCGCATTC
GGCGCGCACG CTGCGGAAAT CACCGTTGTG AACTTCGGCG GCGCCAATGG TGACGCACAG
AAGGCCGCCT TCAACAAGCC GTTCGAGGCG CAAACCGGTA ACAAGGTCAC CGTGGTCGAG
TACAACGGCG AGCAGGCCAA GATCAAGGCC ATGGTGGAAG CCAAGCACGT CAACTGGGAC
GTGGTGGAAG TGGAATCGGG CGACATCGGC CGCGGTTGTG ACGAAGGCCT GTTCGAGAAG
CTGGACTGGA GCAAGATCGC CAAGAAGACC GACCTCATTC CGGAAGCACC GCAAACCTGC
GGCGTGGGCT TCTTCGTGTG GTCCACCGCA CTGGCCTACA ACGCCGACAA GCTCAAGACC
GCCCCCAAGG GCTGGGCCGA TTTCTGGGAC GTGAAGACCT TCCCGGGCAA GCGCGGCATG
CGCAAGGGCG CACGCTACAA CCTGGAATTC GCGCTGATGG CCGACGGCGT ACCCGTCAAG
GATGTCTACA AGGTGCTGGC CACCAAGGAT GGCCAGAACC GCGCGTTCAA GAAGCTCGAT
CAGATCAAGC CGTACATCCA GTGGTGGGAA GCCGGCGCCC AGCCGCCGCA GTTCCTGGTG
GCGGGTGACG TGGTGATGTC GACCGCCTTC AACGGCCGCA TCGATGCCGC GCAGCGCGAA
GGCAAGAACC TCAAGGTGGT GTGGAACGGC AGCATCTACG ACCTCGACTA CTGGGCCATC
CCGAAGGGCT CGCCCAACAA GGCCCTGGCC GAGCAGTACA TCGCGTACAC GCTGTCGCAG
AAACCGCAGC AGGAATACGC CAAGCACATC GCGTACGGCC CGGCCAACGT TGCGGCAATC
AAAGCGCTCG ATGCCAAGAC GCAGGCCAAC ATGCCGAACT CGCCCGAGAA CAGCAAGAAC
GCGGTGCTGC AGAACCTGCA GTTCTGGACC GACCACGGCG ACGAGCTGGA ACAGCGCTTC
GCTTCGTGGG CGTCGAAGTA A
|
|---|
| Protein sequence | MKHITKTRLS VLAGAFAIAF GAHAAEITVV NFGGANGDAQ KAAFNKPFEA QTGNKVTVVE
YNGEQAKIKA MVEAKHVNWD VVEVESGDIG RGCDEGLFEK LDWSKIAKKT DLIPEAPQTC
GVGFFVWSTA LAYNADKLKT APKGWADFWD VKTFPGKRGM RKGARYNLEF ALMADGVPVK
DVYKVLATKD GQNRAFKKLD QIKPYIQWWE AGAQPPQFLV AGDVVMSTAF NGRIDAAQRE
GKNLKVVWNG SIYDLDYWAI PKGSPNKALA EQYIAYTLSQ KPQQEYAKHI AYGPANVAAI
KALDAKTQAN MPNSPENSKN AVLQNLQFWT DHGDELEQRF ASWASK
|
|---|
| |