| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1384 |
|---|
| Symbol | |
|---|
| ID | 8019029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1463772 |
|---|
| End bp | 1464440 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644830163 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_002981344 |
|---|
| Protein GI | 241662984 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.605515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.876718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCAA CACGACTTTC AGCGGGACGT CATGCGGGCG TCGATAATGG GTGGATCGCC
AGCCCGGCGT TTGACGACCC TGCCGTGACC CAGCTCACCC TTCCCGGATT CGAAGCCACC
CCGCAATTGC CCGCGCATCG CCTGTTTCTG GCGATCAAGC CTGACATGGA TACCGCCGAG
CGCATCGCGC GGCTGATCCA GCAATTGCGG CCCGTCGTGG GCTTCAAGGG CAAGGCGCTG
CGTACGGAGC GCCTGCATGT CACGCTGCAT CACCTTGGCG ATTTCGTTCA TCTGCCGCCT
GACGACGTCG TGGCGCGTGT GCGTACAGCA GCGGCCGGCC TCGCGTTGCC GGCATTCGAC
GCCACGTTCA ACCAGGTGGT GAGCTTTCAT GGCCGGCGCG ATCATCGGCC GTTCGTGTTG
CTGGGCGATG AGGGCGTGGG CGGCCTGATG GCGTTTCAGG CGGCACTGGG CGAGGCGCTC
CAGCATGCCG CCGTGCCGGT GCAGCGCGGG CCGTTCAAGC CGCACATCAC GCTGTTGTAT
GACCGCGGCG GCTTTGCGGC GAAGGCAGTC GAGCCCATCA CTTGGACCGT ACGCGAGTTC
GCTTTCATCC ACAGCTGGCT CGGCAAGACG CGCTACGACG AACTCGGCCG CTGGGCGCTC
AAAGGCTGA
|
|---|
| Protein sequence | MRATRLSAGR HAGVDNGWIA SPAFDDPAVT QLTLPGFEAT PQLPAHRLFL AIKPDMDTAE
RIARLIQQLR PVVGFKGKAL RTERLHVTLH HLGDFVHLPP DDVVARVRTA AAGLALPAFD
ATFNQVVSFH GRRDHRPFVL LGDEGVGGLM AFQAALGEAL QHAAVPVQRG PFKPHITLLY
DRGGFAAKAV EPITWTVREF AFIHSWLGKT RYDELGRWAL KG
|
|---|
| |