Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1349 |
Symbol | |
ID | 8018994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1429651 |
End bp | 1431039 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644830129 |
Product | membrane-associated zinc metalloprotease |
Protein accession | YP_002981310 |
Protein GI | 241662950 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00245183 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.774325 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAGACCG TTTTAGCGTT TGTCTTTGCG ATCGCGGTAC TGATCGTCAT TCACGAACTG GGCCACTACA GCGTCGCGCG ATTGTGCGGC GTGAAAGTGC TCCGGTTTTC CGTCGGCTTT GGCAAAGTGC TGTTCCGCCG CGTCGGTCGT GGCCCTGACC ACACCGAATG GACGATCTGC GCCATTCCAC TGGGCGGCTA CGTCAAGATG CTCGGCGAGG GATCGCGAGA CCCCGAGAAA GACCCGCCCA TCCTCCCCGA AGACCTCCCA CGCACCTTCG ATCACCAGCC GGTCTACAAG CGATTCGCCA TCGTGGCGGC TGGCCCGGTC GCCAATTTCC TTCTGGCGAT TGCGCTTTAC GCGGTGCTGG CATGGGTGGG CGCAATCGAG CCGTTGCCTA TCCTCGGCGC TCCGCCGCCG GGCAGCATCG CCGCCCAGGC CGACTTGCGC GCCCGGGACC GGGTGATCGC GATCGGCACG GACGGCGAGA CGCCGGCCTC TGTGCGCAGT TGGAGCGACG TCCGCATGCG CTTGTACTCG GCCGGCATCG CGGGGCGCGA CGCGATTGTG CAGGTGCGCG GCGCCGATGG TGCCGAACGC ACCGTCCGCC TGCATGGCTT GCCGAGCGCA GCCCGTACGC CGCAGGCTGA TGTGATTGAC CAGATTGGTT TGCGTCTGCT CGGCGGCCCG GTCACCATCG TCGATGTGTT GCCCTCCAGT GCGGCGGCGC GCGCAGGGTT GCGGGCCGGA GACCAGATCG TTCGCTTCGC GGGCCAGCCC GCCGATCAGG CAATGGACCT CATCCGCCAG ATCCGCGCCA TGCCGGAGCA GAACGCGTCG ATCGATATTC TGCGCAACGA TCAGCCCATG ACGTTGCCTG TTCGCCCTGA TGCTGACACC GACCCCAAAA ACCCGACCGG CCCGAAGATC GGCAAGCTTG GTGCGCAGCT CAACCAGAAG GTGGAAACGG CGATGATCCG GGACGAGCCG GTCGCCGCAC TGGGCCATGC CGTAGGCGAG GTCTGGCGGA CTTCGGTGCT GTCGCTGCAG GTGCTGGGCA AGATGATCGT CGGTCAGGCG TCGCTGCAGA ATCTGAGCGG GCCGATCACG GTGGCGGACT TTGCGGGCAA GGCGGCAAGC CTTGGCTGGC AGACGTTTGT GAGCTTTCTC GCGTTGATCA GCGTCAGTCT CGGCGTGCTG AACTTATTGC CCGTTCCGGT ATTGGATGGG GGGCATTTGC TGTATTATTG CGTGGAATTT TTGACTGGTC GACCCGTGCC GGAATCCTGG CAAGCAGTCC TTCAGAAGAT CGGCGTCGCC TGCATCCTGC TTCTCACTTC GCTCGCCCTG TACAACGATT TGAGTCGGTT GTTTTTGACT CGAGGCTAG
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Protein sequence | MQTVLAFVFA IAVLIVIHEL GHYSVARLCG VKVLRFSVGF GKVLFRRVGR GPDHTEWTIC AIPLGGYVKM LGEGSRDPEK DPPILPEDLP RTFDHQPVYK RFAIVAAGPV ANFLLAIALY AVLAWVGAIE PLPILGAPPP GSIAAQADLR ARDRVIAIGT DGETPASVRS WSDVRMRLYS AGIAGRDAIV QVRGADGAER TVRLHGLPSA ARTPQADVID QIGLRLLGGP VTIVDVLPSS AAARAGLRAG DQIVRFAGQP ADQAMDLIRQ IRAMPEQNAS IDILRNDQPM TLPVRPDADT DPKNPTGPKI GKLGAQLNQK VETAMIRDEP VAALGHAVGE VWRTSVLSLQ VLGKMIVGQA SLQNLSGPIT VADFAGKAAS LGWQTFVSFL ALISVSLGVL NLLPVPVLDG GHLLYYCVEF LTGRPVPESW QAVLQKIGVA CILLLTSLAL YNDLSRLFLT RG
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