| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1339 |
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| Symbol | |
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| ID | 8018984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1417382 |
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| End bp | 1419265 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644830119 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_002981300 |
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| Protein GI | 241662940 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.476364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCGC CATCTGAGCG CCAGCCTTAC CGGTCTAGAT TCATGACTAC CGATTCCGAT
GATTTTCCGG GCGACGACGA CAAGCGCGGC GCCAGCGACC CGACTCAGCG CGCCACCCGC
CCGGGCAAGC GTGCAACGCT CGGCGTGCGC CGCGACGACG AAGGCAATGC CGTACGCTCC
ACCGGCAAGC CGCTGCGTTC TTCCGACCTG AACCGCGAGC GCCAGCCGCT GCGCCCAGCC
CAGCGCCGCC CCAAGCCGGA AGAAGGCGCA GGTAAGCCGC CTCGCCCCGC ACGTCCTGCG
CGACGCGACG ACGACGGCCA GACGCGCGAA GCCAAGCCGC GCCGCATGCA AGGCGATCGC
CCGCCGCGAC GCTTTGATGA CGAGCGTCCG CCGCGTCGAT TCAGCGACGA GCAACGATCG
CCCCGCCGCT CCGACGACGA GCGCCCGCCG CGTCGGTTCG AAGATCGCCC ACCTCGCCGG
TTCGACGACG AGCGTCCGCC GCGCAGGTTC GACAACGACC GTCCCCCGAG ACGCTTTGAC
GATGAGCGCC CGCCGCGCAG GTTCAGCGAC GACCAACGGC CGCCTCGTCG TTTCGATGAC
GAGCGCCCAC GCCGCTATGG CGACGATCAA CGCGCGCCGC GTCGTGATGG CGACCAACGC
CCTCCGCGAC GCTTTGACGA AGAGCGCCCG CCACGCCGGT TCAATGACGA GCAGCGGCCA
CCGCGCCGCT TCGACGAAGA GCGCCCCCCG CGCAAGTTCG GTGACGATCA GCGCCCGCCC
CGTCGTTTCG ATGACGAAGG CCCGCGCCGC TATGGCGACG ATCAACGCGC GCCGCGTCGC
GATGGCGACC AGCGGCCTCC ACGACGCTTT GACGATGAAC GCCCGCCGCG TCGGTTCAAC
GATGAGCAAC GACCGCCCCG CCGCTATGGC GATGACCGGG CTCCGCGTCG CTTCGATGAC
GAACGCCCTC CGCGTCGTTT TGACAACGAC CGACCACCGC GTCGCTTCGA TGATCGTCCG
GCACGTCCGC AAAGGCCCGA GCGCGAGCGT GAGGAACGCG CTCCGCGTCA CGCCGAGGAG
CAGGCACCGC ACCCGGCGCA GCAGACCGAA TCGAGCGGAC TGGTCCGTCT GTCCAAGCGC
ATGTCCGAAC TGGGTCTGTG CTCTCGCCGC GAGGCCGACG AATGGATTCC GCGTGGCTGG
GTGCTGGTGG ATGGCGAGCC GGTCACCGAA CTGGGGTCGC GCGTCAAGCC GGATGCGATC
ATCGAAATCC ACCAGTCGGC GCGATCCGAG CAAGGCGAGC GCGTCACCGT GCTGATGCAC
AAGCCGGTCG GCTACGTTTC GGGCCAGGCG GAAGACGGCT ATCAGCCAGC AGTTTCGCTA
TTCGTGCCGG AAAACCAGTG GGAAGGCGAT CCTACGCGCA AGCGCTTCGC GCCGTGGCAG
CGTCGGGCAC TGGCGCCGGC CGGGCGGCTG GATATCGACT CCACCGGCTT GCTGGTGTTG
ACGCAGGACG GCCGCGTGGC ACGCCACCTG ATCGGCGAGG ATTCGACGGT CGAGAAGGAA
TACCTTGTGC GCGTGGTGTG GCATTCACCA GACGGCGTTG TCGAGCACGA CATCTCCAAG
GTCTTCCCGG AAGAGCTGAT GGAGAAGCTG CGCTTTGGCC TATCGCTCGA CGGCGAAGCA
CTCAAGCCTG CAAAGGTGAG CTGGCAAAAC GAAGAGCAGT TGCGCTTTGT TCTGCGCGAA
GGCAAGAAAC GCCAAATCCG CCGCATGTGC GAACAGGTGG GACTGGAAGT GGTCGGCCTG
AAGCGCATCC GCATGGGCAG CATCGTGCTG GGCGATCTGC CGGTCGGCCA GTGGCGATTC
CTGGGGCCGT TCGAGAAGTT CTGA
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| Protein sequence | MRSPSERQPY RSRFMTTDSD DFPGDDDKRG ASDPTQRATR PGKRATLGVR RDDEGNAVRS
TGKPLRSSDL NRERQPLRPA QRRPKPEEGA GKPPRPARPA RRDDDGQTRE AKPRRMQGDR
PPRRFDDERP PRRFSDEQRS PRRSDDERPP RRFEDRPPRR FDDERPPRRF DNDRPPRRFD
DERPPRRFSD DQRPPRRFDD ERPRRYGDDQ RAPRRDGDQR PPRRFDEERP PRRFNDEQRP
PRRFDEERPP RKFGDDQRPP RRFDDEGPRR YGDDQRAPRR DGDQRPPRRF DDERPPRRFN
DEQRPPRRYG DDRAPRRFDD ERPPRRFDND RPPRRFDDRP ARPQRPERER EERAPRHAEE
QAPHPAQQTE SSGLVRLSKR MSELGLCSRR EADEWIPRGW VLVDGEPVTE LGSRVKPDAI
IEIHQSARSE QGERVTVLMH KPVGYVSGQA EDGYQPAVSL FVPENQWEGD PTRKRFAPWQ
RRALAPAGRL DIDSTGLLVL TQDGRVARHL IGEDSTVEKE YLVRVVWHSP DGVVEHDISK
VFPEELMEKL RFGLSLDGEA LKPAKVSWQN EEQLRFVLRE GKKRQIRRMC EQVGLEVVGL
KRIRMGSIVL GDLPVGQWRF LGPFEKF
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