| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1062 |
|---|
| Symbol | |
|---|
| ID | 8018700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1118069 |
|---|
| End bp | 1118914 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644829839 |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_002981026 |
|---|
| Protein GI | 241662666 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAATACC AAATTCGACA TACGACGGTC TACCGTTATG CCGAGCCGCT ACGCCACAGC
GTGCATGAGT TGCGGCTGAC GCCTCGCAGC GGCGAGCTGC AACAGGTGGA TAGCTGGCAA
ATCCATGCGC CCGGAAATCT CACGCGGGCC ACCGACGGTT TCGGCAACGT CGTCCATCAC
TTCACCCTCG GCACGCGTAC GGAAGACGTC ACCATCGATG CGCGCGGCGT CGTCGAGGCG
TTTCCCGCGG GTTCCCCCGG CAGCCAATGC TTTGTCGATG CGCCAGGGCA AGGGCGCTAT
CGCGTGTCGC CGCTGTATTT TCTGAGCACA ACGCCGCTGA CTTCCGCGCC GCCCGAGATG
ATCAGTTTTG CGCGCGAGCA CGCGCTGGCG CCCGGCGACG CGGCGTCGGC GCTGCGCCTG
GCGCAAGCCA TCGCCAAGCG CGTGCGCTAC AAGCCGAACA CCACCCACGT CGGCACGGCC
GCTGCGGAAG CATTTGGCCT TGGCACCGGC GTATGCCAGG ACCAGGCGCA GGTGATGGTC
GCCTGCTGCC GCGCCCTGGG CGTGCCGGCG CGGTATGTCA GCGGCTATTT CCACGCAGTG
GGCGAAGAAG ACCTCGCCAG CCACGCCTGG GCGGACGTTT GTCTCGATGC CGAATCCCAC
ACGTGGTGCA GCATCGACGT CACCCACCAG TGCTTCACTG ATACGCGCCA CATCCGCTTG
GCGGTCGGGC GCGATTACCA ATCCGCTGCC CCGGTTCGCG GCGTGCGGCA GGGCGGAGGT
GCCGAGACGC TCGACGTCCG TATTTCCATC GAGCCGCTGC CAGTCGAGGC TGTCGACGTG
AATTGA
|
|---|
| Protein sequence | MKYQIRHTTV YRYAEPLRHS VHELRLTPRS GELQQVDSWQ IHAPGNLTRA TDGFGNVVHH
FTLGTRTEDV TIDARGVVEA FPAGSPGSQC FVDAPGQGRY RVSPLYFLST TPLTSAPPEM
ISFAREHALA PGDAASALRL AQAIAKRVRY KPNTTHVGTA AAEAFGLGTG VCQDQAQVMV
ACCRALGVPA RYVSGYFHAV GEEDLASHAW ADVCLDAESH TWCSIDVTHQ CFTDTRHIRL
AVGRDYQSAA PVRGVRQGGG AETLDVRISI EPLPVEAVDV N
|
|---|
| |