| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1038 |
|---|
| Symbol | |
|---|
| ID | 8018673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1089023 |
|---|
| End bp | 1089931 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644829813 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002981003 |
|---|
| Protein GI | 241662643 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.143731 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAT ACAAAATCCC AAGCTTGCGC TCGTTGCAGG CTTTTGAGGC GGCGGCTCGG
CTCGAGAACT TTACACGGGC AGCAAACGAG CTATCAATAA CGGAAAGCGC TGTATCTCGG
CAGATAATTT CTCTTGAACA AAATCTCGGC GTCACTCTTT TCGTAAGACA AAATAAGAGA
GTGCATCTAA ATCAAACCGG AAGATTATAT GCGGATCACG TTCGTGAGAC GCTGAGTGCG
TTGGATAGTA ACGCATGGCT TTTATCGTCT CGCGTAAACA ATGTATCAAA TTTAGATATC
GCTGTTCTTC CGGAATTTGC TTCAAACTGG TTGATACCAA GGATGAGAGA TTTCTACAGT
TATCATGAGA ATGTTCGCAT AAACATGGTA ACAACATTTG GGCCTATATC ATTTGACAAA
AAGAATTTCG AGGCAGCAAT TTGCTTTGGT ACTCAGACCT GTCTTGATGC CAACACTGAT
CTTCTTTTCG ATGAAGAAAT CATTCCAGTT TGCTCTCCTC AGCTGATCAC TAGTCCCGAC
TGTTACCCGG ATGAGCTTCT CAACTATCCC TTGCTGCAGT CGGGCTATCG AGCCAAGGCC
TGGGAAACCT GGTTCTCCTA TCACGGAGTT GATTGGCGCC AAGCAAAATT GGGAGAGTTC
TACGAAACCT ATTTCATGCT TATTAGCGCC GCAGTAGCGG GGCTTGGTGT CGCTTTGGTA
CCTCGTTTTC TTGTTGAGAG AGAGCTTCAA CAGGAAAAAT TGATCGTGCC AGTTCAGTCA
TCAATTACTT ATAGAAGTGC GTACTTTCTT GCTTATTCAA AGTCTGGAGG TAAAAGCAAT
GAGTTTTCAA TGTTTCGATC GTGGTTAATG GAGGCGGTGG AGAAATATAA GTTGGAAGCC
AAGCTGTAG
|
|---|
| Protein sequence | MPKYKIPSLR SLQAFEAAAR LENFTRAANE LSITESAVSR QIISLEQNLG VTLFVRQNKR
VHLNQTGRLY ADHVRETLSA LDSNAWLLSS RVNNVSNLDI AVLPEFASNW LIPRMRDFYS
YHENVRINMV TTFGPISFDK KNFEAAICFG TQTCLDANTD LLFDEEIIPV CSPQLITSPD
CYPDELLNYP LLQSGYRAKA WETWFSYHGV DWRQAKLGEF YETYFMLISA AVAGLGVALV
PRFLVERELQ QEKLIVPVQS SITYRSAYFL AYSKSGGKSN EFSMFRSWLM EAVEKYKLEA
KL
|
|---|
| |