| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0890 |
|---|
| Symbol | |
|---|
| ID | 8018521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 928291 |
|---|
| End bp | 929292 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644829669 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002980863 |
|---|
| Protein GI | 241662503 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.720466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTCA TTGCTACCGC CGCGACGCTC GATCGAGCCA CCGGACTGCG CCATCTGCGT
GCAGCAGCCG GCGTCGTCGG GGCCGTTCTT CCCCCGACCC CGCAATACTG TTGGCCATTG
CTCTCGCAAG CCATGGACGC GACGGTGTGG GTGAAGCATG AAAACCACAC CGAAGTGGGT
GCGTTCAAGG TGCGGGGCGG GCTGACCTAC CTGCATGCGT TGCGCCAACG TGCGCCCCAG
GTGCGTGGTG TGATTGCGGC GACGCGTGGC AACCATGGAC AGTCGATTGC GTTGGCGGCG
CGCCGGAACG GTCTCGCCGT CACCATCGTC GTGCCGCACG GCAATAGCGT GGAGAAGAAC
GCCGCCATGC GCGCACTCGG GGCCGAGCTG CTTGAAGCGG GCGAGGACTT TCAGGCGAGC
CGCGAGTTGG CCGATCAGTT GGCCGCTGAA CGCGGCTTGC ACTTTGTGCC CTCGTACCAC
GACGATCTGG TTGTCGGGGT GGCGAGCTAC TGGCTGGAGT TCTTTGAAGC CACGCCGTTG
GATGTGGTCT ACGTGCCGAT CGGCATGGGT TCGGGTATTT GCGCGGCGGT ACGGGCGCGC
AATGCGCTGG CGCTGTCGAC GCGCATTGTG GGCGTCGTGT CGGCGCATGC CCGATGCTAT
GAGCAGTCGC TCAAAAGCGG TACCGTGGTG TCGGCGCCGG TCTCGACGCT GCTGGCCGAC
GGGCTAGCGT GCCGCACGCC TGATGCGAAC GCGCTTGAGG TCATCCGCGC TGGCGTCGAC
GAGGTCATTG CGGTGACGGA TGACGAAGTA GCGCAGGCCA TTCGCCTGTA TTTCTCCACC
ACCCACAACG TGGCCGAGGG CGCTGCCGCC GCGGCCTTGG CGGGAGCATG GCAGCAGCGC
GAACAGATCG CCGGCCAGCG CATCGGCCTG CCGCTGACCG GCGGCAACAT CGATCGCGCC
ACGCTGGCGC GCGTGCTAGC CGGTCAGCCG ATCCTGCCTT AG
|
|---|
| Protein sequence | MSLIATAATL DRATGLRHLR AAAGVVGAVL PPTPQYCWPL LSQAMDATVW VKHENHTEVG
AFKVRGGLTY LHALRQRAPQ VRGVIAATRG NHGQSIALAA RRNGLAVTIV VPHGNSVEKN
AAMRALGAEL LEAGEDFQAS RELADQLAAE RGLHFVPSYH DDLVVGVASY WLEFFEATPL
DVVYVPIGMG SGICAAVRAR NALALSTRIV GVVSAHARCY EQSLKSGTVV SAPVSTLLAD
GLACRTPDAN ALEVIRAGVD EVIAVTDDEV AQAIRLYFST THNVAEGAAA AALAGAWQQR
EQIAGQRIGL PLTGGNIDRA TLARVLAGQP ILP
|
|---|
| |