| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0580 |
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| Symbol | |
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| ID | 8018206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 616034 |
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| End bp | 617035 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644829359 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_002980557 |
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| Protein GI | 241662197 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.174594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAACA ATAAGTCCAT TCTGATCACG GGCGGCACCG GCTCTTTTGG CAAGAAATAC
GCTCGTACGA TTCTGAGTCG CTACAAGCCC AAACGCCTGG TCATTTATTC GCGTGATGAG
CTTAAGCAGT TCGAGATGCA ACAAGAGATC AACGCCGGGC CGATGCGCTA TTTCATTGGC
GATGTTCGCG ATGGCGAGCG TCTGGCGCAA GCCATGCGCG GGATCGACTA CGTCATTCAT
GCTGCTGCGC TCAAACAAGT GCCTGCTGCG GAATACAACC CACTCGAGTG CATTAAGACC
AACATTCACG GTGCTGAGAA CGTCATCAAC GCGGCGATCG CCAACAATGT TCATAAGGTG
ATTGCGCTGT CTACTGACAA GGCAGCCAAC CCTATCAATC TCTACGGCGC AACCAAGCTC
GCGTCCGACA AGCTGTTCGT GGCGGCCAAC AACATGGTGG GCGCGAACCA GACTTCGTTC
GCCGTTGTGC GATATGGCAA CGTGGTCGGT TCACGCGGTT CTGTCGTGCC TTTCTTCGAG
CAACTGCTGG CCAAGGGTGA AGCGGAGTTG CCGATCACTC ATGCCGATAT GACTCGCTTC
TGGATCAGCC TGCAGGATGG TGTCGATTTC GTGCTGAAGA ACTTCGAGCG CATGCATGGT
GGTGAGATCT TTGTGCCGAA GATTCCGTCG ATCCGCATTA CCGACCTTGC CGAAGCGATG
GCGCCCGGTG TGGCAACGCG GGTGATCGGA ATTCGTCCTG GTGAGAAGCT GCACGAAATC
ATGTGCCCGG CCGACGACTC ACATCTGACG CTCGAGTTTT CTGACCACTA CGTGCTGCGT
CCGACCATTA AGTTCCATCA TTCCGACATC GACTACACCC TCAATGCATT GGGCGAAACA
GGGACAAGTG TCGCGCAAGG GTTTGAATAC AATTCCGGTA ACAACCCGCA TTTCCTGACA
CCGCAGGAAA TTCGCGATTT CAACGCCAAG GCGATGGCAT GA
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| Protein sequence | MFNNKSILIT GGTGSFGKKY ARTILSRYKP KRLVIYSRDE LKQFEMQQEI NAGPMRYFIG
DVRDGERLAQ AMRGIDYVIH AAALKQVPAA EYNPLECIKT NIHGAENVIN AAIANNVHKV
IALSTDKAAN PINLYGATKL ASDKLFVAAN NMVGANQTSF AVVRYGNVVG SRGSVVPFFE
QLLAKGEAEL PITHADMTRF WISLQDGVDF VLKNFERMHG GEIFVPKIPS IRITDLAEAM
APGVATRVIG IRPGEKLHEI MCPADDSHLT LEFSDHYVLR PTIKFHHSDI DYTLNALGET
GTSVAQGFEY NSGNNPHFLT PQEIRDFNAK AMA
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