| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0550 |
|---|
| Symbol | |
|---|
| ID | 8018176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 582799 |
|---|
| End bp | 583338 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644829329 |
|---|
| Product | peptidase A24A prepilin type IV |
|---|
| Protein accession | YP_002980527 |
|---|
| Protein GI | 241662167 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTT CGACTCACCT CAGCCTAGCC AATCTCGCCC TGATTCTGCT GGTGCTTACG
GCCGCCGCGT ACGACGTGCG CACCCGCCGC ATCCCGAACT GGCTGGTGGG CATGGGTCTG
GTCAGCGCGC TCGTAGCACA GGGCATGGCA ATCGGCGTGG GCGCAGGTTG TCTAGCTTGG
CTTGGCGGCG CCGCTGTTGG CATTGGCTTG TGCTTCGGGT TCTTTGTGCT CGGTGGCATG
GGCGCGGGCG ACGTGAAACT GATGGGCGCG ATCGGCGCGT TCATGGGGCC GTTCGGTGCC
TTTCATGTGG CCTTGGTGAG TTTTCTTGCG GGCGGTGTAC TGGCGCTCGT CATGGTGCTG
CTGCGCCGGG AGGCACGCCG CTCGGCGGCG GGGGTCTCGG CGCTATTGCT GTCAATCCCG
TTCGGCAGCA AGACCGTGCA TGCAGAAGGG CAAGGTCCGA AGCACGGTGG AACGATCCAG
TTGCCTTATG CGGTGGCGTT TGCCGCAGGC ACGTTGCTGG TGAAGTGGGG AGCGATGTAG
|
|---|
| Protein sequence | MTTSTHLSLA NLALILLVLT AAAYDVRTRR IPNWLVGMGL VSALVAQGMA IGVGAGCLAW
LGGAAVGIGL CFGFFVLGGM GAGDVKLMGA IGAFMGPFGA FHVALVSFLA GGVLALVMVL
LRREARRSAA GVSALLLSIP FGSKTVHAEG QGPKHGGTIQ LPYAVAFAAG TLLVKWGAM
|
|---|
| |