| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5020 |
|---|
| Symbol | |
|---|
| ID | 8017447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012855 |
|---|
| Strand | + |
|---|
| Start bp | 305191 |
|---|
| End bp | 306966 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644828708 |
|---|
| Product | parB-like partition protein |
|---|
| Protein accession | YP_002979908 |
|---|
| Protein GI | 241589883 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCT CTACCGAGAC CGCTGTCGTT CCCACGTCCG CTCTGCCGGC CGCTGGCGTC
CTGGTGCCCG AAGACAAGGC ACAAGAGGCC AAATGGGAGC TTGCTCCCGA TAATGGGAAT
CTGATCTATG CCCGCATCGG CGACATACTC GTGGTCTACA ACCCGCGACA GTATTTCGAG
CCGAAAGCGA TGGCAGAGCT GGTCATTTCC ATCCGGGCAC AGGGCATTCT GCAACCCCTC
CTTGTTCGCC CGAAGGATGG GCGATTCGAA CTGATCGCCG GAGAACGCCG TCTGCGTGGT
GCGCTTGAAG CCTACGGCCC GGACGGTGTC ATCCCTGTCT ACTCTCGGGA GATGACCGAT
GCCGAAGCCG CTGCCGCTGC CGCCGCTGAG AACATCCAGC GCGAAGGCAT GTCGGCAACC
GAGGAATCGG GTGCTGCAGT TACGGCAATG GGCCTCTACG GTGGTGATCG CAATGAGGTG
GCAAAGCGGC TGGGTTGGTC AATGCCAAAG CTGGAAAGCC GCCTTGCACT GCAGAACTGC
ACTCCCACAG TTCAGGAAGC GCTGAACGAG CGCAAGATCT CGCTCGGTCA TGCCGAGCTG
CTCGCAGCCG TTCCGAAGAA CGTGCAAACT CAGATCCTTC CGCTCATCAT CGAGAAGAAG
ATCTCGGTCC ACGATCTGAA GAATGAACTG GCCTCGCAGG CTTTGCGGCT CGACAACGCC
CGCTTTGACA AAAGCGAGTG CCTTTCCTGC CATCACAATT CGTCCAATCA GCGTGCTCTT
TTTGCAGAGG CCATCGACGA TGGTCGCTGC ACGAAGAAAT CGTGCTTCGA CGAGAAGAAC
GAAGCGCTGA TCGAATCCGT GAAGAAAAGC CTGGAAGGCC AGTATCAACG CATCCAGGTG
GTCCGGCCCG GCGACAACCA CACGGTGATC GCCCTCAAGG CGGACGGCGA CACGGGTGTT
GGTGCTGAAC AGGCGGAGGC CTGCAAGGGG TGTGCGAACT TTGGTGCGCT CATCTCCGCG
GTGCCCGGCA AGGTTGGCCA AGCGTTCCGG AACTATTGCA TGGATGTTGC GTGCAACAAG
GAAAAGAACA CCGCTTATCT CGCCACCCTC ACTCCGCCTT CGACTGGATC GGGCAAGGGT
TCTGCAACGA CATCCGGTAA GACGGGTGCG GCCAGCGGAT CTACCCAGAA AGGCAAGACG
GGTGCCAAGC CAACCATCTC GGCAGAGTCG CCTCGCGTGA AGGACTATCG CGAGAAGACC
TGGCGGGAAG TGGTGCGCAC CGTGATCCTG CGCAGTTCGG CCAAAACCGA CGTGCTGATC
ATCACTCTTG CCGCACAAGG GTTGCTGCGT CACATCGACG ACCATTCGCT CGCCGAGCAA
GTCCGCAAGG CGAGCGGGGG CAAGGTTGGC TCCGGTGTTC AGTTGAAAGA CAGCCTGAAC
GTCGTCCACG GCCTTGATGA GACGCCACGC AGCCGCCTGC TGGACATGAT CGCGTGGTCG
GTTGTCGACA AGATCCAGAT GTCTGAGGTC AAAGCGCTCG CGTCGTTCCT GGAAGTGGAC
TTTGCCAGTC ACTGGAAGGT CTGCTCCGGT CTGTTCGACG TGATGACGAA GGCCGAGATC
GAAGCTGTGT GCCAAGAGAT CGGCCTGAAG CAGCACCTCG ACAAGCAGTT CTCCAAGATC
ATCTCTGGCA AGCGCGACGA GATGATCAAG GGGCTGCTGG CGACGTCGGA TTTCGATTTC
CACGGCAAGG TTCCTGCCGT CATGCTGCTG AAGTAA
|
|---|
| Protein sequence | MQLSTETAVV PTSALPAAGV LVPEDKAQEA KWELAPDNGN LIYARIGDIL VVYNPRQYFE
PKAMAELVIS IRAQGILQPL LVRPKDGRFE LIAGERRLRG ALEAYGPDGV IPVYSREMTD
AEAAAAAAAE NIQREGMSAT EESGAAVTAM GLYGGDRNEV AKRLGWSMPK LESRLALQNC
TPTVQEALNE RKISLGHAEL LAAVPKNVQT QILPLIIEKK ISVHDLKNEL ASQALRLDNA
RFDKSECLSC HHNSSNQRAL FAEAIDDGRC TKKSCFDEKN EALIESVKKS LEGQYQRIQV
VRPGDNHTVI ALKADGDTGV GAEQAEACKG CANFGALISA VPGKVGQAFR NYCMDVACNK
EKNTAYLATL TPPSTGSGKG SATTSGKTGA ASGSTQKGKT GAKPTISAES PRVKDYREKT
WREVVRTVIL RSSAKTDVLI ITLAAQGLLR HIDDHSLAEQ VRKASGGKVG SGVQLKDSLN
VVHGLDETPR SRLLDMIAWS VVDKIQMSEV KALASFLEVD FASHWKVCSG LFDVMTKAEI
EAVCQEIGLK QHLDKQFSKI ISGKRDEMIK GLLATSDFDF HGKVPAVMLL K
|
|---|
| |