| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6379 |
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| Symbol | |
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| ID | 7975702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1126041 |
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| End bp | 1126874 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796946 |
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| Product | 2-nitropropane dioxygenase NPD |
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| Protein accession | YP_002948205 |
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| Protein GI | 239821020 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.228941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAGTT CCCGCCAGGC TTCGGCGCCC GAATCCGCCG CGGTGCTGCA CCGGCCGGTG
TGCGACCTGC TCAGATGCAG CCTCCCGCTG GTGCTGGCCG GCGCAGCCGA CCCGGAACTG
GTCGCGGCCG TGACGCAGGC CGGCGGCTTC GGCTTCCTCG GCATGGCGGA GGCATCGCCC
ACGCGGATCC GCGAAGAGGT GCTGGCGGTG CGTGCGCACA CGGACCGGCA CTTCGGCGTC
GAATTGAATC CGGCCGCCAC GGAGCCAGCG CTGCTCGACG CGCAGATTGC TGCCTGCATC
GAACTGCGCG TGCCGGTGGC CGGGCTGCTC GGCGCGCTGT CCAGGACCGC CGTGCGGCAG
CTTCGCGAGG CCGGGGTGGT GGTGGCCTGC CAGGTGTCGT CGGTCAGCGC CGCGCGCGAA
GCAGAAGGCG CCGGCGCGCA GATCCTGATC GTGCAGGGCC GGGAGGCCGG CGACGCCGTG
CGCGGCGCGC AGCCGCTTGC GGCCGTTCTT GCGGACGTGC TGGTGCTGGC ATCGGTTCCG
GTGCTCGCCG CGGGCGGCAT CGTCGATGGC GCGGACATTG CCGCCGCGCT GGCCGCGGGC
GCGCAGGGCG CCGTTCTTGG TGCCGCGGCC CTGCAGGCGC GCGAGAGCGA AGGTGAGGCC
GAAGGCACGG CACCGCTGGA GAAGATCGCC AGCGCCAGCA GGCGCCTGCA CCAGCTCGCA
TCGGATGCGG CGGCCTCGCT GCGGGGCCGG GCACTGCGCT TTCCTGAACG CGTGATGCTG
TCGTCGCCGG TCTGCTATGC CGACGAACTC GCGCCATCGA GCAAAAATAA TTGA
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| Protein sequence | MSSSRQASAP ESAAVLHRPV CDLLRCSLPL VLAGAADPEL VAAVTQAGGF GFLGMAEASP
TRIREEVLAV RAHTDRHFGV ELNPAATEPA LLDAQIAACI ELRVPVAGLL GALSRTAVRQ
LREAGVVVAC QVSSVSAARE AEGAGAQILI VQGREAGDAV RGAQPLAAVL ADVLVLASVP
VLAAGGIVDG ADIAAALAAG AQGAVLGAAA LQARESEGEA EGTAPLEKIA SASRRLHQLA
SDAAASLRGR ALRFPERVML SSPVCYADEL APSSKNN
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