| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6378 |
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| Symbol | |
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| ID | 7975701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1124496 |
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| End bp | 1126016 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796945 |
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| Product | protein of unknown function DUF112 transmembrane |
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| Protein accession | YP_002948204 |
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| Protein GI | 239821019 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0718351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGATC TGATCAACCA CCTGTCGCTC GGCTTTTCCA CCGCGGTGAC GCTGCAGAAC
CTGGCCTATG CTTTCATCGG CTGCCTGCTG GGCACGCTGA TCGGCGTGCT GCCGGGCATC
GGCCCGACGG CCACCATTGC CATGCTGCTG CCGGCCACCT ACGCGCTGCC GCCCGTGGCC
GCGCTCATCA TGCTCGCGGG CATCTACTAC GGCTCGCAAT ATGGCGGCTC GACCACCGCC
ATCCTGGTCA ACCTGCCGGG CGAATCCTCG TCCGTGGTCA CGGTGATCGA CGGCCACCAG
ATGGCCAAGC GGGGGCGCGG CGGGCCGGCG CTCGCGGCCG CGGGCCTGGG CTCGTTCTTC
GCGGGCTGCG TGGGCACGCT AATCCTTGCC GCCTTCGCGC CGCCGCTGAC CGAGATCGCC
TTCAAGTTCG GCCCGGCGGA GTATTTCTCG CTCATGGTGC TGGGCCTGAT CGGCGCGGTG
GTGATGGCCT CGGGCTCGCT GCTCAAGGCC ATCTGCATGA TCATGGTGGG GCTGCTGCTG
GGCCTGGTAG GCACCGACGT GAATTCCGGC GTGGCGCGCT ACAGCTTCGA CATCCCGGAG
CTGACCGACG GCCTGGGCTT CATCGCGATC GCCATGGGCG TGTTCGGCTA CGGCGAGATC
ATCGCCAACC TGGCCCGGCC CGAGGACGAG CGCGAGGTGT TCACGGCCAG CGTCTCCGGC
CTGATGCCCA CCAAGGAAGA CTTCAAGCGC ATGCTCCCGG CCGTGCTGCG CGGCACGGCG
CTGGGCTCGT CGCTGGGCAT CCTGCCGGGC GGCGGCGCCA CGCTGTCGGC CTTTGCGGCC
TACACGCTCG AAAAGAAGAT CAAGCTCAAG GCGGGCGAAG TGCCCTTCGG CAAGGGCAAC
ATCCGCGGCG TGGCCGGGCC GGAAGCCGCG AACAACGCGG GCGCGCAGAC CTCCTTCATC
CCGATGCTGA CGCTGGGCAT TCCGCCCAAC CCCGTCATGG CCCTGATGGT CGGTGCCATG
ACGATCCACA ACATCCAGCC GGGCCCGCAG GTGATGACCA GCAACCCGGA GCTGTTCTGG
GGCCTGATCG CCTCGATGTG GATCGGCAAC CTGATGCTCG TGATCCTGAA CCTGCCGCTC
ATCGGCCTGT GGATCAAGCT GCTGACCATT CCCTACCGGT GGCTGTTCCC CGCGATCGTG
CTGTTCTGCG CCATTGGCGT GTACTCGACC AACAACAATG TGTTCGACAT CTGGCTGGTG
GCGATCTTCG GTGTCGTGGG CTACACCTTC ATCAAGCTCG GATGCGAGCC GGCGCCGCTA
CTACTCGGCC TCATCCTGGG GCCGATGATG GAAGAGAACC TGCGGCGCGC GCTGCTGCTC
TCGCGGGGCG ACTGGAGCGT GTTCGTCTCG CGGCCGATCT CCGCGGGGCT GCTGGCGGCC
GCGGTCGCGC TGCTGCTGAT CGTGCTGCTG CCCTCGATCA GATCGAAGCG CGAGGAGGCG
TTTGTCGAGG AAGCAGGCTA G
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| Protein sequence | MMDLINHLSL GFSTAVTLQN LAYAFIGCLL GTLIGVLPGI GPTATIAMLL PATYALPPVA
ALIMLAGIYY GSQYGGSTTA ILVNLPGESS SVVTVIDGHQ MAKRGRGGPA LAAAGLGSFF
AGCVGTLILA AFAPPLTEIA FKFGPAEYFS LMVLGLIGAV VMASGSLLKA ICMIMVGLLL
GLVGTDVNSG VARYSFDIPE LTDGLGFIAI AMGVFGYGEI IANLARPEDE REVFTASVSG
LMPTKEDFKR MLPAVLRGTA LGSSLGILPG GGATLSAFAA YTLEKKIKLK AGEVPFGKGN
IRGVAGPEAA NNAGAQTSFI PMLTLGIPPN PVMALMVGAM TIHNIQPGPQ VMTSNPELFW
GLIASMWIGN LMLVILNLPL IGLWIKLLTI PYRWLFPAIV LFCAIGVYST NNNVFDIWLV
AIFGVVGYTF IKLGCEPAPL LLGLILGPMM EENLRRALLL SRGDWSVFVS RPISAGLLAA
AVALLLIVLL PSIRSKREEA FVEEAG
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