| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6372 |
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| Symbol | |
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| ID | 7975694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1119881 |
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| End bp | 1120723 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796939 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002948198 |
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| Protein GI | 239821013 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.628575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAACA GAAACGTCTT CCGCCTCACC ACGATCGGAA CCTGTCTTTG CGCCGCCTCT
CTGCTGGCGC ATGCCGACCA GTGGAGCGAC ATCAGCGCGC GCAAGGAGCT GCGCTGCGGC
ACCTTCGCCG ACGTGCCGCC CTTTGCCGCG CCGGATCCGA AGACGCGCGA AATGGTGGGC
CACGACGTCG ACCTGTGCCA CGCGCTGGCC AAGGAACTCG GCTTGACGGC CAAGGTCACG
CCGCTGTCGG TGGAGGCGCG CGTGCCCGAG GTCAAGCTCG GGCGCGTCGA CGTGACCATT
GCCAACCTGG CCTACACCAA GAGCCGCGGC GAGCAGATCC AGTTCAGCGA CCCGTACTAC
GTGGCCAAGG AAATGCTCGC CGTGAAAGCC TCCGACCCGG GCGCCGCCAA GGCCGACTTC
AAGGGCAAGC GCCTGAGCTC GACCAAGGGA TCGACCTCGG AGCTGTCGAT CAAGATGAAC
GGCTCGGAGC CCGTGACCTT CCAGGACACC GGCTCGGCCT TCATGGCCGT GCAGCAGAAC
AAGTCGGTCG GCATGGTCGC GAACACCATG ACCATCACCA AACTCGTCAA TCAATCGAAG
ACCGAGGGCG TGGCGCTCAA GATGATCAAG GAGCCGATGG TGCTGCAGCC CATCGGCATC
GGCATGAAGA AGGACGAGCC GGTGCTGCTG GCCAAGGTGA ACGGCGCGCT CTACGCGCTC
GAGAAGTCGG GCGAGCTCGA CAAGATCTGG GCCAAGTGGC TCGGCCCGAA CACCGAATAC
AAGATGGTGC GCGAAGAAAA GGTCACGCCG CTGGCCGAGC TCAAGTTCGA ACTCCTGCCC
TGA
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| Protein sequence | MSNRNVFRLT TIGTCLCAAS LLAHADQWSD ISARKELRCG TFADVPPFAA PDPKTREMVG
HDVDLCHALA KELGLTAKVT PLSVEARVPE VKLGRVDVTI ANLAYTKSRG EQIQFSDPYY
VAKEMLAVKA SDPGAAKADF KGKRLSSTKG STSELSIKMN GSEPVTFQDT GSAFMAVQQN
KSVGMVANTM TITKLVNQSK TEGVALKMIK EPMVLQPIGI GMKKDEPVLL AKVNGALYAL
EKSGELDKIW AKWLGPNTEY KMVREEKVTP LAELKFELLP
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