Gene Vapar_6359 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6359 
Symbol 
ID7975681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp1108441 
End bp1109112 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content70% 
IMG OID644796926 
Producthypothetical protein 
Protein accessionYP_002948185 
Protein GI239821000 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.664548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTACA AAGCCATCCG CAAGAACCCG TCGGCCGCAC CGGTGGCGCC CGAGATCCTC 
GCCGCACTGC GCGAGATCCC CGTCGCGGCG CTCAGCGACA ACATGCACCG CAACATCGGC 
AGCATCGGCC TGCATCCCTA CCACCGCCCA ACGGCGCGGA CCATGGCGGG CACGGCAGTC 
ACGGCACGCT CGCGCGGCGG CGACAACCTC ACGTACCTGC GCGCGCTCGA ATTCTGCCGG 
CCCGGCGACG TGCTGGTGAT CGATGCCGGC GGCGACCTCA ACAACGCGGT GGTCGGCGGC 
ATCCTCTCGT TCTACGCCGC GCACATCGGC ATCCTGGGCG TGGTGGTCGA TGGCGCCATC 
CGCGACGTGG CCGAGGTCCG TGCGCGCGAG TTCCCGGTGT ATGCGCGCGG CGTCACCCAC 
CGCGGCCCCT ACAAGGACGG CCCCGGCGAG ATCAACGTGC CGGTGTCGGT CGGCGGGATG 
GTCGTCAATC CCGGCGACAT CGTGGTCGGC GACCAGGACG GGCTGATGGC CTTCGCGCCA 
GACGAGGCCG AGCTGCTGAT CGAGAAGGCA CGCGCGCACC TCGCGACCGA AGCGGAGACC 
ATCCGGGCCA TGAAGGAGGG CCGATGGGAC CGCGCCTTCA TCGACGCGCT CGAGGCGCGC 
TGCGCCAACT GA
 
Protein sequence
MPYKAIRKNP SAAPVAPEIL AALREIPVAA LSDNMHRNIG SIGLHPYHRP TARTMAGTAV 
TARSRGGDNL TYLRALEFCR PGDVLVIDAG GDLNNAVVGG ILSFYAAHIG ILGVVVDGAI 
RDVAEVRARE FPVYARGVTH RGPYKDGPGE INVPVSVGGM VVNPGDIVVG DQDGLMAFAP 
DEAELLIEKA RAHLATEAET IRAMKEGRWD RAFIDALEAR CAN