| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6337 |
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| Symbol | |
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| ID | 7975659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1072095 |
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| End bp | 1072874 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796906 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002948165 |
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| Protein GI | 239820980 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.40361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAAA GTCCGAATCC ACCCAAGATG GACCGGCTCG CCGCCTTCGT CGAGGTGTTC
AAGCTGCGCG TGGCGGTGCT TGCACCGGGC GAGCCCGGCA CGCCGGCCCT GCTGCTCGCG
GGCCCGGAAG ACGGCACCGC AGGACGGGTG ATCTTCCGGC CCGGCGGCTT TTCCGAACTG
CCGCCCGATG CGCGCATCGC GGCCAGCGTC GATTTCGACA ACGAGGCCAA TCCGCTGATG
AGCGCGATGC CCGAGGAGGT CTCGGTGCCG CTGGACGGCT CGCCGTCGCT GCAGGCCACC
GCCGCAGCCT TCATGGCGGA AGCGGCGGGG AGCCGCTGCG GCCGCAGCGC GGCGCTGAAC
CGGCTCGCCG AGGTGCTGGT GCTGATGGCG CTCCGGAGCG CGATCGATGC GGGCACGCAG
AAGCCGGGCC TGTTCGCCGC GCTCGCGCAT CCTTCGCTGC ACCGGGCCGT GGTGTCGATC
CACGACATGC CGTCGCGGCA GTGGACCGTC GACGACCTGG CGAGCCGGTC GGCCATGTCC
AGGAGCACCT TCATGTCGAC CTTCCGCACG ATCGTCGGCA CCACGCCCAT GGCCTACCTT
GGCGCATGGC GCCTGACGCT GGCGCGCCGC TATCTGATGG CCGGCGACCC GGTCAAGCTC
GCGGCCCGCC GCACCGGGTT CGGCAGCGCC GAGGCTTTCT CCAGAGCCTT TTCAAAAGCG
TACGGGCACG CACCCGCGGC CCTGAAACCG GCGCGGGCCG GCCAGCCGAA GATGTGGTGA
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| Protein sequence | MTQSPNPPKM DRLAAFVEVF KLRVAVLAPG EPGTPALLLA GPEDGTAGRV IFRPGGFSEL
PPDARIAASV DFDNEANPLM SAMPEEVSVP LDGSPSLQAT AAAFMAEAAG SRCGRSAALN
RLAEVLVLMA LRSAIDAGTQ KPGLFAALAH PSLHRAVVSI HDMPSRQWTV DDLASRSAMS
RSTFMSTFRT IVGTTPMAYL GAWRLTLARR YLMAGDPVKL AARRTGFGSA EAFSRAFSKA
YGHAPAALKP ARAGQPKMW
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