Gene Vapar_6318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6318 
Symbol 
ID7975640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp1054405 
End bp1055088 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content71% 
IMG OID644796888 
Producthypothetical protein 
Protein accessionYP_002948147 
Protein GI239820962 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3823] Glutamine cyclotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.960542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGCA GCAAAGCGAG CAAGAAAGAC AAGACGGAAG CCGCGCCGCG CACGGCCGAG 
ATCGTGCGCG AGTACGGCCC CTTCGCCGGC GCCGCCAGCG TGGCCGGCGT GACCCACGAC 
GGCGAGCGCG TCTGGGCGGC CACCGGCGCG CAGCTGGTGG CCTTCGATCC CGCGAGCGGC 
GAGACCACGC GCACCCTCGA CTGCGCCTGC GATGCCGGCA CCGCCTTCGA CGGCACCTAC 
TTCTATCAAA TTGCCGAGGC GCGCATCGAT AAGATCGATC CGGCCAGCGG CAAGGTGCTG 
GCGTCGATTC CCACGCCCGG CCACGGCGGC GACTCGGGCC TGACATGGGC CGAGGGCAGC 
CTCTGGATCG GGCAGTACCG CGACCGCAAG ATCCTCCAGA TCGACCCGGT CAGCGGCGCG 
GTGCTGCGCA CCATCGAGTC CAACCGCTTC GTGACCGGCG TGACCTGGGT CGACGGCGAG 
CTGTGGCACG CCACCTGGGA AGGCGACGAG AGCGAGCTGC GCCGCGTCGA CCCCGACAGC 
GGCGCCGTGC TCGAGCGGCT GGAGATGCCG CGCGGCGCCA ACGTGAGCGG GCTCGAGTCC 
GACGGCGCCG ATCTCTTCTA TTGCGGTGGC GGCGGCAGCG GCAAGGTCCG CGCCGTGCGG 
CGCCCGAAAG CCGCCCGGGC CTGA
 
Protein sequence
MNSSKASKKD KTEAAPRTAE IVREYGPFAG AASVAGVTHD GERVWAATGA QLVAFDPASG 
ETTRTLDCAC DAGTAFDGTY FYQIAEARID KIDPASGKVL ASIPTPGHGG DSGLTWAEGS 
LWIGQYRDRK ILQIDPVSGA VLRTIESNRF VTGVTWVDGE LWHATWEGDE SELRRVDPDS 
GAVLERLEMP RGANVSGLES DGADLFYCGG GGSGKVRAVR RPKAARA