| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6308 |
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| Symbol | |
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| ID | 7975630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1046051 |
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| End bp | 1046857 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796878 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_002948137 |
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| Protein GI | 239820952 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.220056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTCCA CCTGGTTTCT CGACACGCCA CCTGCGGGCC AGTTGCTGGA CGCAGGCGCC
GTCGCGCACC TGCTCGACGC GGGCAGCGAG CAGGCGCCCG CGCTCCACAT GCTCGACTTC
ATCAACCACG TGGTGCCGGT CGAATACATC TCGCTCGTGG AGTACATCGA CGGCGTTCCG
TCGCAGGTCG AAGGGCATGC GATGGGCCGG TGCGACAACA TCACGGCCGA GTGCTTCTCC
CTCTACAAGA AGCGGTTCCG GCTGGCTGAC GACATGACCC GCCTGGCCGC GCGCATGGGT
GGGGAGGCGC TGGCCCACGC ACCCGTGACC GCCTTGCTGT ACGACGCGGC GGACATCCCC
GACCCGGCGT GGCGCGAGCA GATCTTCGTC GGCCGGCAAT TGACGGGGCG GTTGAGCTTT
CTCTACTCGC CCGTGCCGCG CACGATCTTT GCGATCAACC TGTACCGCAA CCGGCAGAAC
GGCCAGTTCG CGCAAGCGGA TGTTGCGCAA CTGCTCGGCC TTGCGCCCCT GTTGAAGCGC
GCGCATCGCA ACGCGCTGTT CGCGCAGCTC GCATCGCCCG ATACGCCGCT GCGCGTGGCG
GGCATCGAGC GCACGCTGCA GCGCACGGCG CCGCAACTCT CGCCGCGCGA GCGCGAGGTC
TGCGCGCGCA TCGCCTGCGG GATCGGCGCC GACGGCATCG CGGCCGACCT GGGCATTGCC
GCGTCGAGCG TGACGACGCT GCGCAAGCGC GCCTACCTGA AGCTCGCGAT CCACGGGCGG
CAACAGCTCC TGCGCTTCAT CCACTAG
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| Protein sequence | MPSTWFLDTP PAGQLLDAGA VAHLLDAGSE QAPALHMLDF INHVVPVEYI SLVEYIDGVP
SQVEGHAMGR CDNITAECFS LYKKRFRLAD DMTRLAARMG GEALAHAPVT ALLYDAADIP
DPAWREQIFV GRQLTGRLSF LYSPVPRTIF AINLYRNRQN GQFAQADVAQ LLGLAPLLKR
AHRNALFAQL ASPDTPLRVA GIERTLQRTA PQLSPREREV CARIACGIGA DGIAADLGIA
ASSVTTLRKR AYLKLAIHGR QQLLRFIH
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