| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6298 |
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| Symbol | |
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| ID | 7975620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 1034588 |
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| End bp | 1035610 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796868 |
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| Product | integrase family protein |
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| Protein accession | YP_002948127 |
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| Protein GI | 239820942 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCGC TTCCCCTCTT CTCCGAACCC TCCGGTGAAT CGCATCAGGC GGCGTTTGCC
AGCTGGCTGG CCGCGCAGCA AGAAAACGGC GCCTTGCGGC AGCCCTCTTC CATCGCGGTC
TATCGCGACA TGTGGGGCAG TTTCACGGCC TGGTGCCTCG GCCAGTCGCC CGCGGTGACG
CTTGCGTCGC TGGACAAGGG CGACCTGTCG GCGTTCCAGC AGGCGCGCTT CGGCATGAAA
AGCGACGACC TGTCGCTGTC GCCGCGCTAT GCGCTGCGCC TGCTTCGGCT GATCGACCGG
GTGCTGCGCC ACCATGCACA GACGCACGAC GTTCCCGTCA ACACCGCCGC CGCGGACTGG
ATCGCAACGC AGCCGGAGAT TCGCTATGCG GATTCGGTGC GGGCCGATCC GCTGCCGGAA
TTCCTCTCGG TTTCCGAGGC CCGGCATCTC ATCGTCTTTC TCTCGAGCGC CCGGCCGCGT
CCCGGCGCGG CAGGCGACCG GCATGCCCAG GCCGCGCTGA GCTGGCAGGC GCTGCGCAAC
CGCACGGCCG TTGCCCTGCA GCTGGGCGCG GGGCTCACGC CCGGAGACGT CCGCCTGCTG
CGGCTCGATG CGCCGACATC GCAGATGGCT GGCCGGCGCG ATCGGCCCTG GAAGGTTGCG
GTGCCGGGCA ACGGCAATTC GCCGGCGCGC GAGGCACCGG TCGCTCCCTG GGCCGGCGAA
CTGCTGCAGC ACTGGCTCAA GGTACGCGCC GAGCTGTTGA TCGCGGGCGA GTTCCTGTTC
CCGGCCACGC GCAGCGGCAA GCCCTGGAGC AAGGAGGCGC AGTACGTTGC CGCCAAGCAG
GTGCTGCAGG ATGCGGGCGT CGAGGCCGCC GGCGGCGGCT CCTTCCTGCT GCGCCACACC
TTTGCGCTGC GCCAGTTGCG CAGGGGCGCC ACGCTCGATC AGGTGGCGCG CTGGCTCGGC
GTGGAGCCCG AGGCGATGGG CAAGTACCAG CGCGTGCTCA CCGGGCCGGC CGAGATCGTC
TGA
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| Protein sequence | MPSLPLFSEP SGESHQAAFA SWLAAQQENG ALRQPSSIAV YRDMWGSFTA WCLGQSPAVT
LASLDKGDLS AFQQARFGMK SDDLSLSPRY ALRLLRLIDR VLRHHAQTHD VPVNTAAADW
IATQPEIRYA DSVRADPLPE FLSVSEARHL IVFLSSARPR PGAAGDRHAQ AALSWQALRN
RTAVALQLGA GLTPGDVRLL RLDAPTSQMA GRRDRPWKVA VPGNGNSPAR EAPVAPWAGE
LLQHWLKVRA ELLIAGEFLF PATRSGKPWS KEAQYVAAKQ VLQDAGVEAA GGGSFLLRHT
FALRQLRRGA TLDQVARWLG VEPEAMGKYQ RVLTGPAEIV
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