| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6291 |
|---|
| Symbol | |
|---|
| ID | 7975507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1029759 |
|---|
| End bp | 1030193 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644796861 |
|---|
| Product | putative universal stress protein (Usp) |
|---|
| Protein accession | YP_002948120 |
|---|
| Protein GI | 239820935 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.184617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGACGGC GCATTCTGGT CCCCATCGAC CCGACCGAGC CGGCCCGCAC GCGCTCGGCC
ATCGAGCAGG TCGTGCGCAT CTGCCGGCAG GAGCCGGCGG CTGTGCGGCT CTTGCGGGTG
CAACCCGTGG TCTCCGGCCA CGTCGCGATG TTCTTCGACC CGCAGGAGCT GCGCGAGCTG
CAGCAGAGCG CGGGCGCCGA GGAACTGCAG TTCGCGCAGA ACCTGCTCGC GATGTCGGGC
GTGTCCTGCA GCAGCACCGT GGCGATCGGC CGCAGCGCCG AGACCATCGT TGCGGCGGCG
CGCGACTTCG GCTGCGACCG CATCGTCTTC GGGCGCGACG AGCCCAGCCT CGCGGGGCGC
ATCTTCGGCT CGCTCGCGCA GCAGGTGCGC CAGCTGCTCG GCGCGAGCGG CGACCTGCAG
GTCATCGGCT CCTGA
|
|---|
| Protein sequence | MRRRILVPID PTEPARTRSA IEQVVRICRQ EPAAVRLLRV QPVVSGHVAM FFDPQELREL
QQSAGAEELQ FAQNLLAMSG VSCSSTVAIG RSAETIVAAA RDFGCDRIVF GRDEPSLAGR
IFGSLAQQVR QLLGASGDLQ VIGS
|
|---|
| |