| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6288 |
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| Symbol | |
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| ID | 7975504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1026845 |
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| End bp | 1027519 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796858 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002948117 |
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| Protein GI | 239820932 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0171319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGATAC TGCTGGTGGA AGACGACAAG GTACTGGCCG ACGCGCTCTC GCGCGCGCTG
GTGCAGTCCG CCCATGCGGT GGACATCGTC TCCACCGGCG AAGAGGCCGA CCATGCGCTC
GCGCTCGGCA TCTACGACCT GGCAATCCTG GACATCGGGC TGCCCAAGCT GAGCGGGCTG
GACGTGCTGC GGCGGCTGCG CGCCCGCAAG TCCACCATGC CGGTGCTGAT GCTGACCGCC
TTCGACACCC TGCAGGACCG CGTGCGCGGG CTCGACCTGG GCGCCGACGA CTACCTGGCC
AAGCCCTTCG ACCTGCCGGA GCTGGAAGCG CGCGTGCGCG CGCTGCTGCG CCGCAGTACC
AATTCCACGC CGTATCTCGA GCACGGCCTG CTGCGCTTCG ACACGGTGGG CCGGCGCGTC
TTCTACGACA AGAAGCCGCT GGACCTGTCG CCGCGCGAGC TCGCCGTGCT GGAGCTGCTG
ATGATGCGCG AGGGTCGCGT GGTGGGCAAG GAGCAGATGG TCAACCATCT CTACGGATGG
GGCGACGAGG TCGGCGACAA CGCGATCGAG GTCAACGTCT ACCGGCTGCG CAAGAAGCTC
GAGCCGCTCG GATGCGAGAT CCGCACCGTG CGCGGCATGG GCTACCTGAT GGACCGCGGC
GATGCGCAAA CCTGA
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| Protein sequence | MRILLVEDDK VLADALSRAL VQSAHAVDIV STGEEADHAL ALGIYDLAIL DIGLPKLSGL
DVLRRLRARK STMPVLMLTA FDTLQDRVRG LDLGADDYLA KPFDLPELEA RVRALLRRST
NSTPYLEHGL LRFDTVGRRV FYDKKPLDLS PRELAVLELL MMREGRVVGK EQMVNHLYGW
GDEVGDNAIE VNVYRLRKKL EPLGCEIRTV RGMGYLMDRG DAQT
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