| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6279 |
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| Symbol | |
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| ID | 7975495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 1016131 |
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| End bp | 1017222 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796849 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_002948108 |
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| Protein GI | 239820923 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000172683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGA ACTACCGCAT CGCCGTCCTG CCGGGAGACG GCATCGGCAC CGAAGTCATG
CACGCGGCGC AGGCCGTACT GGAAGCCGTG CAGCCGCGCG TCGGCCGTGC GCTGGCACTC
GAATGGCTGC CGGCCGGCGC ACAGCACTAT CTCGACAGCG GCGTCGCGCT GCCCGAGACC
ACGCTGCGCC GCTGTGAGAG CGCGGACGCC ATCCTGTTCG GTGCGATGGG CCTGCCGCAC
GTGCGCGGCG CCGACGGCAC CGAGATCATT CCGCAGCTCG ACCTGCGCAT GCACTTCGAC
CTGTATGCCG GCGTGCGGCC GATCCGCACC TTCCGCGGCC TGCCCACGCC GTTGTCGAAC
CCTAAGGCCG AGCACATCGA CCTGGTGCTG GTGCGCGAGA GCACCGAAGG CCTGTTCTAT
GCCCGCGGCC GCGGCGACGT ACGCGGTGAC CAGGAAGTGT TCGACACCAT GCGTATCACG
CGCCACGGCA CGACACGCAT CTGCGAATTC GCCTTCCGCC TGGCCGCACG CCGGGCCGAG
CGGCTGGGCC GCGCAGGCCG CGTGACCAAC GTGGACAAGG CCAACGTCTT CGCCTCGATG
GCCTTCTTCC GCAAGGTGTT CGAGGAAGTC GCGGCGCGCC ATCCGGCGGT GGCGGCCGAC
AGCGGCTATG TCGATGCGAT GGCACTCAAC CTGGTGATGA AGCCGTGGAC CTACGACGTG
CTGGTCACCG AGAACATGTT CGGCGACATC CTGTCGGACC TCATTGCCGC GCTGGTCGGC
GGCATGGGCA TGGCGCCCTC GGGCGACATC GGCGACAGGC ACGCACTGTT CCAGCCGGCG
CATGGCACCG CGCCCGACAT TGCGGGCCAG GGCAAGGCGA ACCCGACCGC GATGCTGCTG
TCGGCCGCCA TGATGCTCGA GTGGCTGGCT GAGCGCAGCG GTGACACCGC ACTGGCCGAC
GGCGCGGCGC TGATCGAACG CGCGGTCGAG CAGGTGTTCG CCACCGGCCA GGTGCGGCCG
ATGGAGTTCG GCGGCATGCA CGGCACGGCC GACATCACGC GCGCGGCCAC CGACGCCCTG
CGCGCGGCCT AG
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| Protein sequence | MEKNYRIAVL PGDGIGTEVM HAAQAVLEAV QPRVGRALAL EWLPAGAQHY LDSGVALPET
TLRRCESADA ILFGAMGLPH VRGADGTEII PQLDLRMHFD LYAGVRPIRT FRGLPTPLSN
PKAEHIDLVL VRESTEGLFY ARGRGDVRGD QEVFDTMRIT RHGTTRICEF AFRLAARRAE
RLGRAGRVTN VDKANVFASM AFFRKVFEEV AARHPAVAAD SGYVDAMALN LVMKPWTYDV
LVTENMFGDI LSDLIAALVG GMGMAPSGDI GDRHALFQPA HGTAPDIAGQ GKANPTAMLL
SAAMMLEWLA ERSGDTALAD GAALIERAVE QVFATGQVRP MEFGGMHGTA DITRAATDAL
RAA
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