| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6247 |
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| Symbol | |
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| ID | 7975463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 983735 |
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| End bp | 984667 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796817 |
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| Product | pyrroloquinoline quinone biosynthesis protein PqqB |
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| Protein accession | YP_002948076 |
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| Protein GI | 239820891 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
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| TIGRFAM ID | [TIGR02108] coenzyme PQQ biosynthesis protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCC TGGTCCTCGG CTCCGGCGCG GGCGGCGGTT TTCCGCAATG GAACTGCAAC
TGCCGGCTGT GCGCGGGCCA GCGCCAGGGC GTGCTCGACG CCTGCGCGCG CACGCAAAGC
TCCGTCGCCG TTTCCGCCGA CGGCGAATCG TGGGTGCTGC TCAATGCCTC GCCCGACATC
GGCCAGCAGA TCCGCAGCCA CCCCCAGCTG CATCCGCGCC ACGGCCTGCG CGACACGCCG
ATCAAGGCGG TGGTGCTGAT GGATGCGCAG ATCGACCATG TCGCCGGGCT GCTCGGGCTG
CGCGAGGGGC CCCGCATCGA CCTCTATGCC ACGCCCTGCG TGTTCGAGGA CCTGACCACC
TCCTTTCCCG TGCTCGGCGT GCTGGAGCAC TACTGCGGCA CGCGCTGGCA CATGCTGGCG
GTGGCCGGCA CGCAGACGCG CATCGACTTC GGCGTGGCCG GCTTTCCTTC GCTGCGCTTC
ACCGCGGTGG CCATTCCCGG CAAGGCGCCG CCCTATTCGC CGCACCGCCG CGAGCAGACC
GTGGGCGACA ACATCGCGCT GCTGATCGAG GACCTGCAGG GCGGCCAGCG CCTCTTCTAC
GCGCCGGGCC TGGCCGAGGT CGGCCCCGAG GAGCTGCGCT GGATGCACGA TGCCGACTGC
CTGCTGCTGG ACGGCACCTT CTGGACCGAG GACGAGATGC GCCATGCCGG CCTGGGCACC
CGCAGCGCCA GCGACATGGG CCACCTGCCG CAGACCGGCA GCGGCCCGCG CGCCGGCATG
GTGGACGCGC TGCTGGCCAC GCCGGCGCGG CGCAAGGTGC TGACCCACAT CAACAACAGC
AACCCGATCC TCGACGCCGC GAGCGCGCAG CGCCAGCTGC TCGAAGGCCA TGGCATCGAG
GTGGCCTACG ACGGGATGGA GATCACGCTG TGA
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| Protein sequence | MKVLVLGSGA GGGFPQWNCN CRLCAGQRQG VLDACARTQS SVAVSADGES WVLLNASPDI
GQQIRSHPQL HPRHGLRDTP IKAVVLMDAQ IDHVAGLLGL REGPRIDLYA TPCVFEDLTT
SFPVLGVLEH YCGTRWHMLA VAGTQTRIDF GVAGFPSLRF TAVAIPGKAP PYSPHRREQT
VGDNIALLIE DLQGGQRLFY APGLAEVGPE ELRWMHDADC LLLDGTFWTE DEMRHAGLGT
RSASDMGHLP QTGSGPRAGM VDALLATPAR RKVLTHINNS NPILDAASAQ RQLLEGHGIE
VAYDGMEITL
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