| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6223 |
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| Symbol | |
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| ID | 7975439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 953815 |
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| End bp | 954834 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796793 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002948052 |
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| Protein GI | 239820867 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAG CAGGGCTGAA AGGCACCGTT TCCATCGAGC TCGTGCACGA GGCGCTTCGC
GCCGCCGCGC TCAGGAACAT GGACATCAGC GGCGTGCTCG AGATCGCCAG GCTGGACCGC
GATCTGCTGA ACGCGCCGCG TGCGCGCATT TCGGCGGCCG CCTACTCGCG CATGTGGGTG
GCCCTGGCCG ACCTGATGGA TGACGAGTTC TTCGGGCTGG ACAGCCACGG GCTGCGCCGC
GGAAGCTATG CGCTCATGAC GCGCGCGGCG GTCAGCTCGG AGAACCTGGA GCACGCGCTG
CGCCGGATCC TCCGCTTTCT TCACGCCACC CTGGACGACT TTCGCGGGGA GCTGGTGCGA
TCGGCCGACG AGGCGCGCGT GATCCTGCAC GACGGTGGCG TGCTGCGCCG GCTGTTCGGC
TACGGCACCT GGTTCATCCT CGTCCATGGA CTGGCATGCT GGCTCGTGCA CCGGCGGATT
CCCCTGCGCG AGATGCGGTT CCGCTGCCCG CCTCCGGCCG ATGACAGCCA CTACCGCACG
CGCTTCTGCG AGGACGTGAA GTTCAACGCA CAGACCACGC ACATCACGTT CGCCAGTGAG
CTGCTCGATC TGAAGATCGC GGAATCTCCG CAGACCGTCG ACACCTTCCT GCGGGCCGCG
CCCGCCAACC TGCTGGTCAA GTACCGCAAT GACTCGAGCA CCAGCGCACA GGTGCGGCAC
CGGTTGCGCA GCCAGATGCC CGATGCGTGG CCCGAACTGG AGAAGCTCGC GCAGGAGCTC
TGCGTCTCCG GCACCACGCT CCAGCGCCGA TTGCAGCAGG AGGGGCTGAG CTACCAGCGC
GTGAAGGACG ATCTGCGGCG GGACATCGCG ATCGACCTGC TGTCGAGCGC CTCGTTGACG
GTGGCCGAGG TCGCCGCCCG CACCGGATTC CAGGAGCCCA GCGCCTTTCA TCGCGCCTTC
AAGAAATGGA CGGGCGTGAG CCCCGGAAGC TACCGCTCCT CTGCGCACAC ACGGGAATGA
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| Protein sequence | MKSAGLKGTV SIELVHEALR AAALRNMDIS GVLEIARLDR DLLNAPRARI SAAAYSRMWV
ALADLMDDEF FGLDSHGLRR GSYALMTRAA VSSENLEHAL RRILRFLHAT LDDFRGELVR
SADEARVILH DGGVLRRLFG YGTWFILVHG LACWLVHRRI PLREMRFRCP PPADDSHYRT
RFCEDVKFNA QTTHITFASE LLDLKIAESP QTVDTFLRAA PANLLVKYRN DSSTSAQVRH
RLRSQMPDAW PELEKLAQEL CVSGTTLQRR LQQEGLSYQR VKDDLRRDIA IDLLSSASLT
VAEVAARTGF QEPSAFHRAF KKWTGVSPGS YRSSAHTRE
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