Gene Vapar_6178 details

Gene Information

• Locus tag: Vapar_6178
• ID: 7975068
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 909872
• End bp: 910462
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644796748
• Product: transcriptional regulator, TetR family
• Protein accession: YP_002948007
• Protein GI: 239820822

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTCCA CCACCAGAGA CAAGATGATC GCCGGCGCCG CCGACCTGCT GAGCCGGCGC 
GGCGTGCACG CCACGAGCCT GCGAACCGTG GTGCAGCACA CCGGCACGCC GCGCGGCTCG 
CTGGGCCATC ATTTCCCCGG CGGCAAGCAG CAGCTGCTGG AAGAGGCGGT GCGCCACGCC 
GCCGAGAGCG TGGCGGTGCC GCTGGAAACG CTGATGAAGG AGCGCGGCGC GGTGGAAGGC 
CTGCAGGCCT TCGTCGGCTG GTGGCGGCGC ATCCTCGAGA GCTCCGGTTT CGAGGCCGGC 
TGCCCTGTGC TGGCGGTGGC GGTGGAACCC ATGGCGGACG AAGAGGACGC CGCATCGGGG 
GAGCACCTTC GCGAACTCGC TCGCGAGGCC TTCGAGCGCT GGGAAGCCAT CCTCGCCGCC 
GCGCTGCGAC GCGAGGGCGT GGCCGCAGGC CGCGCGCAGC GGCTGGGGGC GCTCACCGTG 
GCTGCCATCG AAGGCACGGT GGCGATGTGC CGAGCCTCGC GCAGCACGCG GGCGCTCGAT 
GATGTGCAGC TGGAGCTGAA AGCCATGCTG ATGGCGGCGA CCGCGCGCTG A 

 

Protein sequence

MSSTTRDKMI AGAADLLSRR GVHATSLRTV VQHTGTPRGS LGHHFPGGKQ QLLEEAVRHA 
AESVAVPLET LMKERGAVEG LQAFVGWWRR ILESSGFEAG CPVLAVAVEP MADEEDAASG 
EHLRELAREA FERWEAILAA ALRREGVAAG RAQRLGALTV AAIEGTVAMC RASRSTRALD 
DVQLELKAML MAATAR