| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6167 |
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| Symbol | |
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| ID | 7975057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 894431 |
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| End bp | 897316 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796737 |
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| Product | transcriptional regulator, winged helix family |
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| Protein accession | YP_002947996 |
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| Protein GI | 239820811 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCCCGC CACCGGCCAT CAGGAAAGAA CCGCTCGCCC AGCCAGGCGA GATCGTTTCA
TTCGGCCCTT TCACCCTGCG AGTCAACGAG CGGCTGCTGG CGCGCAACGG CGTGCCGCTG
GATCTGGGTG GCCGCGCCAT GGATGTGCTC CTCGCGCTGA TCGCCAGGGC CAACGCCGTG
GTGAGCAAGG AGGAACTGCT GGCAGAGGCT TGGCCCGGCG TGGTCATTTC AGACGGAAGC
CTGCGCTACC AGATCACGAT GCTGCGGCAG GCGCTCGGCG ATGGGCAGGA TGGCGCCCGC
TATGTGTCGA ACATCGTCGG CCGCGGCTAC TGCTTCGTCG CCAAGATTTC CAGGACCTTT
GCCGAGCCGG AGGTGCAGGC GCAGCGGGAC GAGTCGCCGG TCGAGCCTGG CTTGCCTGCG
CCGCCGGGCC TGCTGGTCGG GCGCAGCGGG GATCTGGCCG CCATTGCGGC GCAGCTTGCC
AAGGGACGCT TCGTCACGCT GGTGGGTACC GGGGGCGTCG GCAAGACGAC GGTCGCGGTC
CGGACCGGGC ACGATCTGCT GGCCGATTTC GCCGGCGCGG TCGTCTTCGT GGACCTGGCG
ACACTCACCG ATCCTTCCTT GGTCCCGACC GCCATCGCCT CGATGCTGCG GCTCTCGGTG
CGTTCCGCCG ATCCGGTTCC CAGCCTGATC TCGTACTTGC GCGAGCGCCG GATGCTCCTT
GTCCTGGACA ACTGCGAACA CGTGATCGCG GCGGCAGCTT CGCTGGCCGA GAGAATCTTC
CAGGCCGCGC CCAGCATCCA TATCCTGGCC ACGAGCCGGG AGGCGCTGCG GGTCCGGGGA
GAGTATGTCC ACCCGCTGAA TCCATTTGCC AGTCCGCCGG ACCTTCCCGG CCTCGGCGCG
CGCGAGATCC TCGCGTATCC CGCCACGCGC CTGTTCGTGG ACAGGGCCGA GGCCAGCGGA
AGCACGCTCG ACCTCGACGG CACCGACGCG CCGATCATCG CGAACATCTG CAGAAAGCTC
GATGGCGTGG CGCTGGCCAT CGAACTCGCG GCGCGCCGCG TGTCGACCTA TGGGCTGCAC
CAGACCGCCA CGCTGCTGGA CGAGCGGCTC GCGCTTTCAT GGCTCGGCCA GCGCGGCGCG
CAGCCGCGGC ACGCCACGCT GCAAGCCACG CTGGACTGGA GCTACGAGCT TCTCGACATC
CACGAACGGC GGGTGCTGTG CCGCCTGTGC GTCTTTGTCG GGTACTTTTC GCTCGATGCC
GCGCGCCATG TGGCCGATGC GGACAACCTG TCGAAGGAAC AGATCGTCGC CGCGATCGCG
AGCCTGGCGG AGAAGTCCTT GCTTGCCATC CGGCCGTCGG GCGCCTTCAC CCAGTACCGC
CTTCTGGAAA GCACGCGCAC CTACGCACTC TCGAAGGCCG ACGAAGCGAC CGTGGACGAC
GCGTCGCTGC ATCACGCGCG CTACTTTAGG GACCGGCTGC AACAGATGGC GGCGTCCCGC
GGCGCCGGGC ATGCGCCCGA TGGCGCCTCG GAGACAGCCG ACCTGGGCAA CATCCGCGCC
GCCCTCACGT GGTGTTTCGG CCGGGGCCGC GCGACGGAGC TGGGCGTTTC GCTCGCATCG
GCCGCAGTGC CTGCGTTCCT GGCGAAGTCA TTGCTGGCCG AGTGCCACGG CTGGTCGAGG
CGAGCGCTTG CGCAGCTCAC GCCCGCACTG CGCGGCAGCT CGACCGAAAT GCACCTGCAG
GCAGCCATCG GTGTCTCGCA GATGTTCACC CGCGGCAACA GCGACGAGGT GCGGGCGGCT
CTGGAGCGCA GCCTCGAGGT GGCCGAGGCA CTGGAAGATG CCGCCAGCCA GGTCCAGCTG
CTTGGCCGGC TCCAGATCTT TCACGAGCGT ATCGGCGACT TCGTCGAATC ATTGAAATAC
GCGCATCGCT GCGCCCGCGT GGCCAGCACC ATCGGCGACG CGACCGCGGT GGCCGCGGCG
AATTCGCTGG TCGGGCTCTG CAACCATCTG CTGGGCGATC AGCCCGAGGC CAGGCGCCTG
CTCGAAGCCG CGCTCGCCGG GTCGCCCGAT TCGCTGCAGG ACAGCAGCAT CTACTCTGGA
TTCGATCTGC GCAACCGCGC CCGCATCGCG CTGGCCAGGA CCTTGTGGCT CCAGGGCTAC
CCGTCGCAGG CCGTCGTGCT CGCGCAGCGC GCCGTCGACG AAGCGCGGCA ACTGGACCAT
CCCGTCACGC TGTGCATCGC GCTGATCTGG GCGGTGTCGG TGTACATGTG GGTCGGCGAC
CTGGAACGCG CCGAACGGGA CATCGACCGA TTCATCGCCT ATGCGGAGGC CCATTCGCTC
ACGCCGTACC TGGCCGTGGG CCGGGGGGTC AAGGGCGAAC TGGCCGTCAG GCGCGGCGAT
GCCGGGCGCG GCGTCCAGGC GATCCAGGAC TGCCTGGTGG AGCTTCGCGA ATCCCGCTAC
GAGCTGCTCA CCACGGCATT CAACCTGACG CTGGCCGAGG GCCTGACCGC CCTGGGGCAG
ACAGCCGACG CGCTGGAACT GCTGGACGAC ACCCTGGCGC TGGTGCATGC AAAAGGCGAC
CTGTACAACC TTCCGGAACT CCTTCGGGCC AAGGCCCGCG CGTTGTCGTG CCTGCCGCCT
TCGCACGCGG CGCAAGCCGA GGAGTGCCTC GTCCAGTCGC TCGCCAGCAG CAGGCAGCAA
GGCGCCCGCG CGTGGGAGCT GCGAACGGCG ACCGACCTTG CGCGGATGTG GCAGGCAGCC
GGACGCGAGC GCGAGGCGCG AGCCCTGCTG GAAGGCATCC TTGCCCACTA CACCGAAGGC
TTCGACACCA CGGACCTTCA ACAGGCGCAG CAGCTCTTCG GCAAGGCAAA AGGCGCGGCC
GTCTGA
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| Protein sequence | MSPPPAIRKE PLAQPGEIVS FGPFTLRVNE RLLARNGVPL DLGGRAMDVL LALIARANAV
VSKEELLAEA WPGVVISDGS LRYQITMLRQ ALGDGQDGAR YVSNIVGRGY CFVAKISRTF
AEPEVQAQRD ESPVEPGLPA PPGLLVGRSG DLAAIAAQLA KGRFVTLVGT GGVGKTTVAV
RTGHDLLADF AGAVVFVDLA TLTDPSLVPT AIASMLRLSV RSADPVPSLI SYLRERRMLL
VLDNCEHVIA AAASLAERIF QAAPSIHILA TSREALRVRG EYVHPLNPFA SPPDLPGLGA
REILAYPATR LFVDRAEASG STLDLDGTDA PIIANICRKL DGVALAIELA ARRVSTYGLH
QTATLLDERL ALSWLGQRGA QPRHATLQAT LDWSYELLDI HERRVLCRLC VFVGYFSLDA
ARHVADADNL SKEQIVAAIA SLAEKSLLAI RPSGAFTQYR LLESTRTYAL SKADEATVDD
ASLHHARYFR DRLQQMAASR GAGHAPDGAS ETADLGNIRA ALTWCFGRGR ATELGVSLAS
AAVPAFLAKS LLAECHGWSR RALAQLTPAL RGSSTEMHLQ AAIGVSQMFT RGNSDEVRAA
LERSLEVAEA LEDAASQVQL LGRLQIFHER IGDFVESLKY AHRCARVAST IGDATAVAAA
NSLVGLCNHL LGDQPEARRL LEAALAGSPD SLQDSSIYSG FDLRNRARIA LARTLWLQGY
PSQAVVLAQR AVDEARQLDH PVTLCIALIW AVSVYMWVGD LERAERDIDR FIAYAEAHSL
TPYLAVGRGV KGELAVRRGD AGRGVQAIQD CLVELRESRY ELLTTAFNLT LAEGLTALGQ
TADALELLDD TLALVHAKGD LYNLPELLRA KARALSCLPP SHAAQAEECL VQSLASSRQQ
GARAWELRTA TDLARMWQAA GREREARALL EGILAHYTEG FDTTDLQQAQ QLFGKAKGAA
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