| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6136 |
|---|
| Symbol | |
|---|
| ID | 7975582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 857543 |
|---|
| End bp | 858415 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796692 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002947966 |
|---|
| Protein GI | 239820781 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0756138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAGA CCGTCATCCA GGGCGTGCTG CTCGGCGGCC TCTACACGCT GTTCGCGCTC
GGCCAGTCGC TGATGTTCGG CGTCATGCGG CTCACCAACA CGGCGCAGGG CGACTTCATC
ATCCTTGGCG CCTTCGCGGT CATTGCGGGC GTGTCGGTGG CGGGCGATGC CACGCCGGGG
CTCGTTGCCA TGGTCGCGCT CGCGGTGCTG CCGGTGGCCT TCGTGTTCGG CTACGCGCTG
CAGCGCTACG TGCTCAACGG CACGCTCGGC AAAGACCCGC TGCCCTCGCT CGTCGTCACC
TTCGGCTTGT CGATCGTCAT CCAGAACCTG CTGCTCGAAC TGTTCTCGGC CGACCCGCGC
GCCATCGAGA CCGGCGGGCT CAGCACGCAG GGCGTGGCGC TGGGCGACAC GCTCTCGCTC
GGCGTGCTGC CGCTCGTCGT GTTGGCCGTC GCGCTGGTTG CAACGGCCGC GCTGCAATGG
CTCTTCGCGC GCACGGCGCT GGGCCGCTCG TTCCGCGCGG TGTCCGACGA CCGCGAGATC
GCCGAACTCA TGGGCCTGGA CGCGAAGAAG GTCTATGCCT TCGCGACCGC CATTGCCTTC
GTGCTGATCG CCATCGCCGG TGCGCTGCAG GGCATGCGCA CCACGGTGTC GCCGTCGGAC
GGCCCGCTGC TGCTGCTGTT CGCCTTCGAG GCCGTGATCA TCGGCGGCAT GGGCTCGTTC
TGGGGCACGC TGGCCGGCGC GATGATCCTG GGCATCACGC AGCAGATCGG CTTCCGGCTC
GATCCGGGCT GGGGCATCTG GTTCGGGCAC ATCGTGTTCC TGGTCGTGCT GGTGCTGCGG
CCGCAGGGCC TTTTTCCGAA GACACGTGGA TGA
|
|---|
| Protein sequence | MLETVIQGVL LGGLYTLFAL GQSLMFGVMR LTNTAQGDFI ILGAFAVIAG VSVAGDATPG
LVAMVALAVL PVAFVFGYAL QRYVLNGTLG KDPLPSLVVT FGLSIVIQNL LLELFSADPR
AIETGGLSTQ GVALGDTLSL GVLPLVVLAV ALVATAALQW LFARTALGRS FRAVSDDREI
AELMGLDAKK VYAFATAIAF VLIAIAGALQ GMRTTVSPSD GPLLLLFAFE AVIIGGMGSF
WGTLAGAMIL GITQQIGFRL DPGWGIWFGH IVFLVVLVLR PQGLFPKTRG
|
|---|
| |