Gene Vapar_6080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6080 
Symbol 
ID7975526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp800125 
End bp800724 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content70% 
IMG OID644796636 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947910 
Protein GI239820725 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACGCA TCATGCGAAA CACAAAGCAC AGCGTCAGGG CAGCGGCCAA GGAGGCCTCG 
CACGAGCGCA TCCTGTCCGT GGCTGCCCGT GCGATCCGCC GCAGCGGCTA CGACGGCACC 
GGCGTGGCCG ACATCATGAA GGAAGCCGGC CTGACCCATG GCGCCTTCTA CGCCCATTTC 
CCCTCGCGCG AAGCCATGCT GGCCGAAGCC GCGGGCCGGG CCTGTACCGA ATCGGCCGCG 
GCCGCCGCCA AGGCCGCTTC CGACGAGCCC TCCGGGCAGG CCCTGCCCGC CATGCTGCGT 
GCCTACCTTT CGCCGGAACA TGTGGCGCAT GCGGAGATGG GGTGCCCGCT GGCCGCGCTG 
GGCTCGGAAA CGCCGCGCCA GGCCGCCGAA GTGCGGCGCG TGACCACCCG CCACCTCAAG 
GAAATGATCG ACCTCGTCGC GCGCCAGTCG CCCGACTGGG GCCAGCCCGC TGCGCATGAA 
CGCGCAGTCG TGACCGTTGC CACCATGGTC GGCACCTTGC TGCTCGCGCG CGCGGTCGAC 
GAGCCGGCGC TGTCGGCCAG CCTGTGCGAG GCTGCGCTGA AGCATTTGAC GCCGGCCTGA
 
Protein sequence
MIRIMRNTKH SVRAAAKEAS HERILSVAAR AIRRSGYDGT GVADIMKEAG LTHGAFYAHF 
PSREAMLAEA AGRACTESAA AAAKAASDEP SGQALPAMLR AYLSPEHVAH AEMGCPLAAL 
GSETPRQAAE VRRVTTRHLK EMIDLVARQS PDWGQPAAHE RAVVTVATMV GTLLLARAVD 
EPALSASLCE AALKHLTPA