| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6079 |
|---|
| Symbol | |
|---|
| ID | 7975525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 799057 |
|---|
| End bp | 800040 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796635 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947909 |
|---|
| Protein GI | 239820724 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CCAGCTTTCG CTCCACCCGC CGCACTGCGC TGCACATGCT CGCGGCAGGC
GCCGCCTCGC TCGCCCTGCC CGCCTTCGCG CAATGGCCCG ACAAGCCGAT CAAGATCATC
GTGACCTTTC CGCCGGGCGG CTCCAGCGAC GTGCTCGCGC GCCTGCTCGC GGAACAGCTG
TCGAAGAAGC TGGGGCAGCC GGTGGTCGTG GACAACAAGC CCGGCGCGGG CGGCACCATC
GGCGGCGCAC AGGTGGCCGC GGCCGCGCCC GACGGCTACA CGCTGATGCT CTCGAACACC
ACGCCGATCG CGCTCGGCCC CTTCACGCTC GACAAGCAGC CCTACGATCC GGTGGCGGGC
TTCAGCCACA TCGCCTACCT GGGCGCCGCG CCGCTGGTCA TCATGGCCAG CAAGCCCTCG
GGCTTCAGGA GCTATGCGGA CTTCGAGGCG GCCGGACGCA AGGATGGCCG CATGGACTTC
GGCTCGGGCG GCCCCGGTTC GATCGGCCAC ATCCACGGCG AGCTGCTCAA GAAGATCACC
GGGATCAACA TGGTGCACGT GCCCTACCGC GGCGGCGCGC CGATGACCAC CGACCTGATC
GCCAACACCA TTCCGGTGGG GATCGACGTC ATCACCGCCT ACGTCCCCTT CTTCAAGAGC
GGACAGCTGG TGCCCCTGGC CGTGACCGGC ACCCAGCGCT CGCCGCTGAT GCCGGACGTG
CCGAGCATCG CCGAGCTCAA GCAGCCGAAG CTGGTGCTGG AGAACTTCTT CGGCCTGTCC
GGCCCGGCCA GGCTGCCGGA GGACGTGGTG GCGCGGCTCA ACGCGGCCTG CAACGAGGTG
CTGGTGATGC CCGAGATCCA GAAGAAGCTC ACCGATCTGG GCATCGTGGC CAAGCCCGAG
ACCGTCGCCA TGTTCAACGG CTTCGTGAAG GAGCAGGTGA ACGTGCTGGG CCCGACAGTC
AAGGGCGCGG GCATCAAGCT CTGA
|
|---|
| Protein sequence | MTTTSFRSTR RTALHMLAAG AASLALPAFA QWPDKPIKII VTFPPGGSSD VLARLLAEQL
SKKLGQPVVV DNKPGAGGTI GGAQVAAAAP DGYTLMLSNT TPIALGPFTL DKQPYDPVAG
FSHIAYLGAA PLVIMASKPS GFRSYADFEA AGRKDGRMDF GSGGPGSIGH IHGELLKKIT
GINMVHVPYR GGAPMTTDLI ANTIPVGIDV ITAYVPFFKS GQLVPLAVTG TQRSPLMPDV
PSIAELKQPK LVLENFFGLS GPARLPEDVV ARLNAACNEV LVMPEIQKKL TDLGIVAKPE
TVAMFNGFVK EQVNVLGPTV KGAGIKL
|
|---|
| |