Gene Vapar_6071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6071 
Symbol 
ID7975517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp792050 
End bp792679 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content70% 
IMG OID644796628 
ProductDimethylmenaquinone methyltransferase 
Protein accessionYP_002947902 
Protein GI239820717 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCAAC TGCTGGCCTT GCTGAAGGAG GTCGAGCCGG CCACCATCGG CCACTTTCAT 
GATCGCGGCT TCCTGCATGG GCGGATCAAG GCCGTGACTG CGGTGGCGCG CAGCGTCGGC 
ACCGCCGTCA CCGTGCGCTG CGAGGGCTCG GACGGATCCA TCCTGCATCA CGCGCTGGGA 
CAACTGCGGG CCGGCGATTT CCTGTTCGTC GACCGCGCCG GCGACGAGAC GATCGCGTGC 
ATGGGAGGTG CCAGCATGTT GGCAGCACGC CTGCGCGGTG TCGCAGGCGT GGTGGTCGAT 
GGCTGCGTCA CGGACATCGC GGAACTGCGC GAGCTCGGCG TGCCGGTGTG GGCCCGCGGC 
CTGAGCGCCC GCACCACCCG CGCCGGCGGG CAGTCGGGCA GCTTCTGTCG GCCGGTGGAC 
TGCGGCGGCG TGCGCGTGCG TCCCGGCGAT GCCGTGCTGG CTGACGAAAA CGGTGTTCTG 
GTGATGCCAC CCGACGAGGC GTGGGCCTTG GCCCGAAAGG CGATCGAGCT GCAACAGGCG 
GAGCAGCAGA CGCTGTCACG GCTGCGCGCC GGCGAGTCCT ATTCCGAGGT GCTGGACACG 
CGCCTTGTTT TCCAGGAGGC AGCGGCATGA
 
Protein sequence
MLQLLALLKE VEPATIGHFH DRGFLHGRIK AVTAVARSVG TAVTVRCEGS DGSILHHALG 
QLRAGDFLFV DRAGDETIAC MGGASMLAAR LRGVAGVVVD GCVTDIAELR ELGVPVWARG 
LSARTTRAGG QSGSFCRPVD CGGVRVRPGD AVLADENGVL VMPPDEAWAL ARKAIELQQA 
EQQTLSRLRA GESYSEVLDT RLVFQEAAA