| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6066 |
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| Symbol | |
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| ID | 7975512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 786996 |
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| End bp | 787865 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796623 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002947897 |
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| Protein GI | 239820712 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.576026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGAAG CCTATGCACT CCACGAAGGC GCGTTCGGCA CGGCGATCGT CCTGGAGGCG
AGCGCCAATC TGGTGTCGCA CGCGCACTCG GAAACGCAGC TCGCCCTTTG GCTGGGCGGA
GCGCGGGCGT GCGCGCACGT TGGTACGGAA ACCGTCGACT ACAGCGAAAG CGTGGCGCTG
GGGGTGAACG CGTTCGAGGC GCACGACATG GTGCGCCTGG ACCATGCTGG TTCGAGCCTG
TTCATCGTCT TCATGATCAA GAAGGACTGG CTCGACGCGC TGGGCCAAGC GAAGGACCGC
AGCTTCCAGT TTCCGTCGCC CCGCGTGCCC ATCGGCGACG CGCTGCGGCG TTCATGCTGG
CGGGTGCTGG ACCTGATGAT CTGCGCGGGG ACCGGACGCG AACAGGTCGA CAAGGAGGTG
GAGCGCCTGT TGGAGGCCGC CATCGCGGCT TCCACGACGG GCGGCGAAGC GCCGCCCGTG
GCCGGTGGCA TCGGCGTCAC GCTGGACCAT CGCCTGCGCG CCGCCATCGC CCACATGCGT
GCGCATGTCT CGGAGAAGAC GACCATCGAC GAGATCGCGG CCAAGGTCGG CCTGTCGCGC
GCGCACTTCT TCGCGCTGTT CCGCGATCAA CTGCACACGA CCCCGCAGGT GTTTTGGAGC
GGCGTGCGCG TCGAGGAGGC GATGCGGCGT GTCAGCGAAG GGGGCGAGCT CACGGACGTC
GCGCTCGACC TGGGTTTTTC GGCGCCGGGG AACTTCTCGC GCTTCTTCAA GGAGCACACC
GGGATTTCGC CGTCGATCTT CAAGCGGGCC ACGCGCGCGC CTTCACCTGT CACGGTCACA
GGAATTCCGC GCGAGAGGCA GGGCTTCTAG
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| Protein sequence | MQEAYALHEG AFGTAIVLEA SANLVSHAHS ETQLALWLGG ARACAHVGTE TVDYSESVAL
GVNAFEAHDM VRLDHAGSSL FIVFMIKKDW LDALGQAKDR SFQFPSPRVP IGDALRRSCW
RVLDLMICAG TGREQVDKEV ERLLEAAIAA STTGGEAPPV AGGIGVTLDH RLRAAIAHMR
AHVSEKTTID EIAAKVGLSR AHFFALFRDQ LHTTPQVFWS GVRVEEAMRR VSEGGELTDV
ALDLGFSAPG NFSRFFKEHT GISPSIFKRA TRAPSPVTVT GIPRERQGF
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