| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6060 |
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| Symbol | |
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| ID | 7975345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 781482 |
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| End bp | 782642 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644796618 |
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| Product | Mandelate racemase/muconate lactonizing protein |
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| Protein accession | YP_002947892 |
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| Protein GI | 239820707 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.587027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACGA TCCAATCCAT AGAAACGTTG CTTGTTCAGC TTCCCACGCG CAGAGAACAC
AAATGGACCG GCCTGACCGA ATCCATCGGC CGTTATCTGC TGACCCGCGT CGTCGACAGC
GACGGCCGCA CAGGCTGGGG CGAGGCGCCT GCGCTAAAAG ATTGGGGCGG CGAATTTGGG
CGCTACTTCG GCGAGTCCAC GCTCATCGCC AAGACGGTGA TCGAGAAGTA CCTTGCACCA
TCGCTGATTG GTGTTGAGCT CGGGAATTTC GCGGAGATGC ATGCACGCAT GGACGCGGTA
ATCCGTGGCT ATCCGTACGC CAAGGCCGCG GTCGAATTCG CCGCTTACGA CGTCACGGGC
CGGTGGCTCG GCCTGCCAGT GCACATGCTG CTCGGTGGCA AGGTGCGACC GCGCGTGATG
GTGACGCATT CGATCGGCTT GATCCCGATC GCAGAAGCCG AAAAGGAAGT GGCGCAGGTT
GCTGCCGAAG GTATCAAGAC GATCAAGATC AAGATCGGCG TTGATGCCAA GCGTGACATC
GACATGGTGC GGACCATCCG GGGGGCGGTG GGCGACGACA TCGAACTGTG CGTCGATGCG
AACGAGGGCT ATCGAACGCC CGGCGAAGCC ATCGCGACGG TGCGTGCGAT GGAGCCGTAC
CGGCTCAAAT ACGTGGAGCA ACCGGTGATG GGCATAGAAC GCATCGCGGA AGTGGCGCGG
GCCATCGACC CGCCGGTGAT GGCCGACGAA TCGGCATGGA ACGCGCACGA CGTGATCCAG
ATCAGCGAGC GGCGCGCGGC GCAGATCGTA TCGATCTACA GCACCAAACC CGGCGGCCTC
TACAAGGCCA TGGAGGTCGC GGCCGTGTGT CGCGCGGCCG GGATCATCTG CAACGTCAAT
GGCTCGGTCG AGACCGGCAT AGGCAACCTC GCCAACGTCC ATCTGGCCGC TGCGGCGCCT
GCGGCCACGC TGTCGTGCGT GGTGCCCGTG TCAACGCCGG CTGAATGGCA GCACGGCCAA
GTCGGCGGCA TCTACTACCG CGACGACCTG ATCGTCGCTC CCATGAAGCT CGTCGATGGC
GGCATCGAGG TGCCGACGGC ACCGGGCATG GGCATCGACG TCGATCTGGC CAAGGTCGAG
AAGTACACCG TCCGCGACTG A
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| Protein sequence | MPTIQSIETL LVQLPTRREH KWTGLTESIG RYLLTRVVDS DGRTGWGEAP ALKDWGGEFG
RYFGESTLIA KTVIEKYLAP SLIGVELGNF AEMHARMDAV IRGYPYAKAA VEFAAYDVTG
RWLGLPVHML LGGKVRPRVM VTHSIGLIPI AEAEKEVAQV AAEGIKTIKI KIGVDAKRDI
DMVRTIRGAV GDDIELCVDA NEGYRTPGEA IATVRAMEPY RLKYVEQPVM GIERIAEVAR
AIDPPVMADE SAWNAHDVIQ ISERRAAQIV SIYSTKPGGL YKAMEVAAVC RAAGIICNVN
GSVETGIGNL ANVHLAAAAP AATLSCVVPV STPAEWQHGQ VGGIYYRDDL IVAPMKLVDG
GIEVPTAPGM GIDVDLAKVE KYTVRD
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