| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6049 |
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| Symbol | |
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| ID | 7975334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 771245 |
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| End bp | 772135 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796608 |
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| Product | Shikimate/quinate 5-dehydrogenase |
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| Protein accession | YP_002947882 |
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| Protein GI | 239820697 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0373] Glutamyl-tRNA reductase |
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| TIGRFAM ID | [TIGR02853] dipicolinic acid synthetase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.289518 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTGGA ATCAACTCGT CATCGCCATC GTCGGCGGCG ACCGCCGCGA GCAGGAGATC
GCGCGCTGCG CCGTGGCGGC CGGCGCCGAG GTGCGCGCCT ATGGCTTTCC CTGGCCTGAG
CAGGGACTTG CCGGGGTGCG AGCTTGCGAC AGCGCGCGAG AGGCGCTGGA AGGCGCCGAC
ATTGCGCTGT TCCCGATCCC TGGCATTGCG CCCGATGGCG CGCTGTTCGC GCCGCAATGC
GAGCAGCGCA TCGTTCCGGA CCGCGAGATG CTCGCGGGCA TGCGCAAGGG CGGCCACATC
GTCCTGGGCT GGGCCGACCC CAAACTCAAG GCGCATTGCG AAGCACTGAG CATCGCCCTT
CACGAATACG AGTGGGACGA AGACCTGATG CTGCTGCGCG GTCCTGCGAT CGTCGAGGGA
ATGCTCAAAG TGCTGATCGA GAACACCGAC ATCACGATCC ACCGCGCCAG GATCTGCTTG
GTCGGACAGG GCACCATCGG CTCGCTGGTC ACCCATACCC TGCTGGCGCT GGGCGCGCGA
GTGCATGTTG CCGCGCGCAA TGCCGTGCAG CGTGCCGCGG CGCATGCGGC CGGGGCCGAA
TCTCACGATC TGACAGAGCT GGCGCAGGTG CTGCCTGGCA CCGACATTGT CATCGCCAGC
GTGCCTGCAC GCGTGCTCGG TCGGGAGCTG CTGCAGACGC TTCCCAAGCA CGCCTTGCTG
GTGGACCTCG CGGCGCCGCC GGGCGGCATC GACCGCGATG CGGCGCAGGA ACTCGGGCTC
AAGTTCATCT GGGCCCGTGG CCTCGGTGCG CGCGCACCCA TCACTGTCGG ACGCAGCCAG
TGGAGCGGCG TGCAACGACG AATCGAGAAC ATCCTGAAGG AATCCCAATG A
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| Protein sequence | MNWNQLVIAI VGGDRREQEI ARCAVAAGAE VRAYGFPWPE QGLAGVRACD SAREALEGAD
IALFPIPGIA PDGALFAPQC EQRIVPDREM LAGMRKGGHI VLGWADPKLK AHCEALSIAL
HEYEWDEDLM LLRGPAIVEG MLKVLIENTD ITIHRARICL VGQGTIGSLV THTLLALGAR
VHVAARNAVQ RAAAHAAGAE SHDLTELAQV LPGTDIVIAS VPARVLGREL LQTLPKHALL
VDLAAPPGGI DRDAAQELGL KFIWARGLGA RAPITVGRSQ WSGVQRRIEN ILKESQ
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